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# Map generator

This code assemble resources into a single map.

## Requirements

* Java 8
* Maven 3.6

## Compilation

```
mvn -DskipTests=true clean install -pl biohackathon -am
```

The compiled runnable file will be located in biohackathon/target/biohackathon-1.0-jar-with-dependencies.jar.

## Execution

To get information about parameters just run:

```
java -jar biohackathon/target/biohackathon-1.0-jar-with-dependencies.jar
```

Sample usage:

```
java -jar biohackathon/target/biohackathon-1.0-jar-with-dependencies.jar --enrichr-file biohackathon/data/enrichr_output.txt --minerva-file  biohackathon/data/example_pathway_to_pull.txt --text-mining-file  biohackathon/data/brugada_output_file_omnipath.tsv --output-file output.xml
```