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  1. 08 Feb, 2021 1 commit
  3. 04 Feb, 2021 1 commit
  5. 03 Feb, 2021 3 commits
  7. 02 Feb, 2021 6 commits
  9. 01 Feb, 2021 2 commits
  11. 30 Jan, 2021 1 commit
  13. 26 Jan, 2021 15 commits
    • somersj's avatar
      Fixed annotations, protein state labels · 15388a11
      somersj authored
      15388a11
    • Marek Ostaszewski's avatar
      Merge branch 'repo_update' into 'master' · 1eccba28
      Marek Ostaszewski authored 
      add drug targets and update various files:

See merge request !268
      1eccba28
    • cylon-x's avatar
      Merge branch 'tmpBranch' into repo_update · f4ad0fab
      cylon-x authored
      f4ad0fab
    • cylon-x's avatar
      Merge branch 'repo_update' of https://git-r3lab.uni.lu/covid/models into repo_update · 4a18596a
      cylon-x authored
      4a18596a
    • cylon-x's avatar
      Update models · 9acab5da
      cylon-x authored
      9acab5da
    • Marek Ostaszewski's avatar
      add drug targets and update various files: · 0c51d734
      Marek Ostaszewski authored
      0c51d734
    • Marek Ostaszewski's avatar
      Merge branch 'repo_update' into 'master' · eacdd016
      Marek Ostaszewski authored 
      access functions updated, fixed

See merge request !267
      eacdd016
    • cylon-x's avatar
      Update models · a9ec0c63
      cylon-x authored
      a9ec0c63
    • Marek Ostaszewski's avatar
      access functions updated, fixed · 80805a05
      Marek Ostaszewski authored
      80805a05
    • Marek Ostaszewski's avatar
      Merge branch 'repo_update' into 'master' · eec10c48
      Marek Ostaszewski authored 
      access functions updated

See merge request !266
      eec10c48
    • cylon-x's avatar
      Merge branch 'repo_update' of https://git-r3lab.uni.lu/covid/models into repo_update · 16a1f548
      cylon-x authored
      16a1f548
    • Marek Ostaszewski's avatar
      Merge branch 'master' into 'repo_update' · 0cdce10d
      Marek Ostaszewski authored 
      # Conflicts:
#   Executable Modules/SBML_qual_build/sif/Apoptosis_stable.sif
#   Executable Modules/SBML_qual_build/sif/Apoptosis_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/ER_Stress_stable.sif
#   Executable Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/ETC_stable.sif
#   Executable Modules/SBML_qual_build/sif/ETC_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/E_protein_stable.sif
#   Executable Modules/SBML_qual_build/sif/E_protein_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/IFN-lambda_stable.sif
#   Executable Modules/SBML_qual_build/sif/IFN-lambda_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Interferon1_stable.sif
#   Executable Modules/SBML_qual_build/sif/Interferon1_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/JNK_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/JNK_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Nsp4_Nsp6_stable.sif
#   Executable Modules/SBML_qual_build/sif/Nsp4_Nsp6_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Nsp9_protein_stable.sif
#   Executable Modules/SBML_qual_build/sif/Nsp9_protein_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Orf10_Cul2_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Orf10_Cul2_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Orf3a_stable.sif
#   Executable Modules/SBML_qual_build/sif/Orf3a_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/PAMP_signaling_stable.sif
#   Executable Modules/SBML_qual_build/sif/PAMP_signaling_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Pyrimidine_deprivation_stable.sif
#   Executable Modules/SBML_qual_build/sif/Pyrimidine_deprivation_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/RTC-and-transcription_stable.sif
#   Executable Modules/SBML_qual_build/sif/RTC-and-transcription_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Renin_angiotensin_stable.sif
#   Executable Modules/SBML_qual_build/sif/Renin_angiotensin_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/TGFB_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/TGFB_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Virus_replication_cycle_stable.sif
#   Executable Modules/SBML_qual_build/sif/Virus_replication_cycle_stable_raw.sif
      0cdce10d
    • cylon-x's avatar
      Update models · a329a00d
      cylon-x authored
      a329a00d
    • cylon-x's avatar
      Merge branch 'repo_update' of https://git-r3lab.uni.lu/covid/models into repo_update · d799e3a3
      cylon-x authored
      d799e3a3
    • Marek Ostaszewski's avatar
      access functions updated · b69666e8
      Marek Ostaszewski authored
      b69666e8
  15. 25 Jan, 2021 11 commits
    • Marek Ostaszewski's avatar
      Merge branch 'repo_update' into 'master' · 121e6261
      Marek Ostaszewski authored 
      formats in sbgn

See merge request !265
      121e6261
    • Marek Ostaszewski's avatar
      Merge branch 'master' into 'repo_update' · 3fdfb358
      Marek Ostaszewski authored 
      # Conflicts:
#   Executable Modules/SBML_qual_build/sif/Apoptosis_stable.sif
#   Executable Modules/SBML_qual_build/sif/Apoptosis_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/ER_Stress_stable.sif
#   Executable Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/ETC_stable.sif
#   Executable Modules/SBML_qual_build/sif/ETC_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/E_protein_stable.sif
#   Executable Modules/SBML_qual_build/sif/E_protein_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/IFN-lambda_stable.sif
#   Executable Modules/SBML_qual_build/sif/IFN-lambda_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Interferon1_stable.sif
#   Executable Modules/SBML_qual_build/sif/Interferon1_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/JNK_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/JNK_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Nsp4_Nsp6_stable.sif
#   Executable Modules/SBML_qual_build/sif/Nsp4_Nsp6_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Nsp9_protein_stable.sif
#   Executable Modules/SBML_qual_build/sif/Nsp9_protein_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Orf10_Cul2_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Orf10_Cul2_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Orf3a_stable.sif
#   Executable Modules/SBML_qual_build/sif/Orf3a_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/PAMP_signaling_stable.sif
#   Executable Modules/SBML_qual_build/sif/PAMP_signaling_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Pyrimidine_deprivation_stable.sif
#   Executable Modules/SBML_qual_build/sif/Pyrimidine_deprivation_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/RTC-and-transcription_stable.sif
#   Executable Modules/SBML_qual_build/sif/RTC-and-transcription_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Renin_angiotensin_stable.sif
#   Executable Modules/SBML_qual_build/sif/Renin_angiotensin_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/TGFB_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/TGFB_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Virus_replication_cycle_stable.sif
#   Executable Modules/SBML_qual_build/sif/Virus_replication_cycle_stable_raw.sif
      3fdfb358
    • cylon-x's avatar
      Update models · 8966ff10
      cylon-x authored
      8966ff10
    • Marek Ostaszewski's avatar
      formats in sbgn · f0dd7bdf
      Marek Ostaszewski authored
      f0dd7bdf
    • Marek Ostaszewski's avatar
      Merge branch 'repo_update' into 'master' · ea544ac4
      Marek Ostaszewski authored 
      smaller crosstalks

See merge request !264
      ea544ac4
    • Marek Ostaszewski's avatar
      Merge branch 'master' into 'repo_update' · b3c04e51
      Marek Ostaszewski authored 
      # Conflicts:
#   Executable Modules/SBML_qual_build/sif/Apoptosis_stable.sif
#   Executable Modules/SBML_qual_build/sif/Apoptosis_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/ER_Stress_stable.sif
#   Executable Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/ETC_stable.sif
#   Executable Modules/SBML_qual_build/sif/ETC_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/E_protein_stable.sif
#   Executable Modules/SBML_qual_build/sif/E_protein_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/IFN-lambda_stable.sif
#   Executable Modules/SBML_qual_build/sif/IFN-lambda_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Interferon1_stable.sif
#   Executable Modules/SBML_qual_build/sif/Interferon1_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/JNK_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/JNK_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Nsp4_Nsp6_stable.sif
#   Executable Modules/SBML_qual_build/sif/Nsp4_Nsp6_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Nsp9_protein_stable.sif
#   Executable Modules/SBML_qual_build/sif/Nsp9_protein_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Orf10_Cul2_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/Orf10_Cul2_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Orf3a_stable.sif
#   Executable Modules/SBML_qual_build/sif/Orf3a_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/PAMP_signaling_stable.sif
#   Executable Modules/SBML_qual_build/sif/PAMP_signaling_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Pyrimidine_deprivation_stable.sif
#   Executable Modules/SBML_qual_build/sif/Pyrimidine_deprivation_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/RTC-and-transcription_stable.sif
#   Executable Modules/SBML_qual_build/sif/RTC-and-transcription_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Renin_angiotensin_stable.sif
#   Executable Modules/SBML_qual_build/sif/Renin_angiotensin_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/TGFB_pathway_stable.sif
#   Executable Modules/SBML_qual_build/sif/TGFB_pathway_stable_raw.sif
#   Executable Modules/SBML_qual_build/sif/Virus_replication_cycle_stable.sif
#   Executable Modules/SBML_qual_build/sif/Virus_replication_cycle_stable_raw.sif
      b3c04e51
    • cylon-x's avatar
      Update models · 5070811a
      cylon-x authored
      5070811a
    • Marek Ostaszewski's avatar
      smaller crosstalks · ebd8d89d
      Marek Ostaszewski authored
      ebd8d89d
    • Marek Ostaszewski's avatar
      Merge branch 'repo_update' into 'master' · 4a4d790c
      Marek Ostaszewski authored 
      minerva utils

See merge request !263
      4a4d790c
    • cylon-x's avatar
      Update models · 13467c79
      cylon-x authored
      13467c79
    • Marek Ostaszewski's avatar
      minerva utils · 8e84770c
      Marek Ostaszewski authored
      8e84770c