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change docker img of python

See merge request !281

Reset the auto-built files

See merge request !280

Compartment update

See merge request !279

Repo update

See merge request !278

Merge branch 'master' into repo_update

Update Readme.md, Analysis/EUvsVirus/Covid19KG_Fraunhofer_Hipathia/.gitkeep,...

See merge request !277

Update Readme.md, Analysis/EUvsVirus/Covid19KG_Fraunhofer_Hipathia/.gitkeep, Analysis/EUvsVirus/GMLs_AF__four_maps/.gitkeep, Analysis/EUvsVirus/GMLs_AF__four_maps/Apoptosis.gml, Analysis/EUvsVirus/GMLs_AF__four_maps/Apoptosis_AF.pdf, Analysis/EUvsVirus/GMLs_AF__four_maps/ER-stress.gml, Analysis/EUvsVirus/GMLs_AF__four_maps/ER-stress_AF.pdf, Analysis/EUvsVirus/GMLs_AF__four_maps/Interferon.gml, Analysis/EUvsVirus/GMLs_AF__four_maps/Interferon_AF.pdf, Analysis/EUvsVirus/GMLs_AF__four_maps/PAMP.graphml, Analysis/EUvsVirus/GMLs_AF__four_maps/PAMP_AF.pdf, Analysis/EUvsVirus/Hipathia_maps/.gitkeep, Analysis/EUvsVirus/Hipathia_operableMaps/.gitkeep, Analysis/EUvsVirus/Hipathia_operableMaps/hsaCovid19KG.att, Analysis/EUvsVirus/Hipathia_operableMaps/hsaCovid19KG.sif, Analysis/EUvsVirus/MINERVA-API/drug_targets/ACE2-Spike-drugs.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Apoptosis.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/ER stress.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/HCoVs ER stress (WP4869).txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/HCoVs autophagy (WP4863).txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Interferon 2 pathway.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Nsp14 and metabolism.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Nsp4 and Nsp6 interactions.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Orf10 Cul2 pathway.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/PAMP signaling.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Type I Ifn signaling (WP4868).txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Virus replication cycle.txt, Analysis/EUvsVirus/MINERVA-API/element_jsons/ACE2-Spike-drugs_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Apoptosis_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/ER stress_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/HCoVs ER stress (WP4869)_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/HCoVs autophagy (WP4863)_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/HMOX1 pathway_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Interferon 2 pathway_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Nsp14 and metabolism_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Nsp4 and Nsp6 interactions_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Orf10 Cul2 pathway_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/PAMP signaling_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/RTC and transcription_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Type I Ifn signaling (WP4868)_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/Virus replication cycle_annotations.json, Analysis/EUvsVirus/MINERVA-API/element_jsons/overview_annotations.json, Analysis/EUvsVirus/MINERVA-API/overlays/all_MINERVA_targets.txt, Analysis/EUvsVirus/MINERVA-API/overlays/eNIOS_downregulated_genes.txt, Analysis/EUvsVirus/MINERVA-API/overlays/eNIOS_drug_targets.txt, Analysis/EUvsVirus/MINERVA-API/overlays/eNIOS_upregulated_genes.txt, Analysis/EUvsVirus/MINERVA-API/overlays/textmining_drug_targets.txt, Analysis/EUvsVirus/MINERVA-API/ACE2-Spike-drugs.txt, Analysis/EUvsVirus/MINERVA-API/Apoptosis.txt, Analysis/EUvsVirus/MINERVA-API/ER stress.txt, Analysis/EUvsVirus/MINERVA-API/HCoVs ER stress (WP4869).txt, Analysis/EUvsVirus/MINERVA-API/HCoVs autophagy (WP4863).txt, Analysis/EUvsVirus/MINERVA-API/Ifn 2 pathway drug targets MINERVA.txt, Analysis/EUvsVirus/MINERVA-API/Influenza-Cytokine-storm_Textmining_2018.gpml, Analysis/EUvsVirus/MINERVA-API/Interferon 2 pathway.txt, Analysis/EUvsVirus/MINERVA-API/Nsp14 and metabolism.txt, Analysis/EUvsVirus/MINERVA-API/Nsp4 and Nsp6 interactions.txt, Analysis/EUvsVirus/MINERVA-API/Orf10 Cul2 pathway.txt, Analysis/EUvsVirus/MINERVA-API/PAMP signaling.txt, Analysis/EUvsVirus/MINERVA-API/Type I Ifn signaling (WP4868).txt, Analysis/EUvsVirus/MINERVA-API/Virus replication cycle.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets.R, Analysis/EUvsVirus/MINERVA-API/generate_SBML.R, Analysis/EUvsVirus/MINERVA-API/hackathon_covid19_map_v3-elementExport.txt, Analysis/EUvsVirus/MINERVA-API/map_cytstorm.txt, Analysis/EUvsVirus/MergedModels/.gitkeep, Analysis/EUvsVirus/MergedModels/Apoptosis_VS_SSA_AN_drugs_mirna.xml, Analysis/EUvsVirus/MergedModels/COVID19_PAMP_signaling_drugs_mirna.xml, Analysis/EUvsVirus/MergedModels/ER_Stress_drugs_mirna.xml, Analysis/EUvsVirus/MergedModels/Interferon2_drugs_mirna.xml, Analysis/EUvsVirus/Overlays_Updated_Vid/.gitkeep, Analysis/EUvsVirus/Overlays_Updated_Vid/ER_stress_drugs_enios.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/ER_stress_text_mining_drugs.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/InterferonEniosListWithDrug.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/InterferonTextMiningListWithDrug.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/Overlay_ER_Stress_Downregulated.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/Overlay_ER_Stress_Upregulated.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/Overlay_IFN_downregulated.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/Overlay_IFN_upregulated.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/Overlay_PAMP_Downregulated.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/Overlay_PAMP_Upregulated.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/PAMP_enios_drugs.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/PAMP_text_mining_drugs.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/apoptosis_enios_drug_target.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/apoptosis_text_mining_drug_target.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/downregulated_apoptosis_enios.txt, Analysis/EUvsVirus/Overlays_Updated_Vid/upregulated_apoptosis_enios.txt, Analysis/EUvsVirus/Hackathon workflow.png, Analysis/EUvsVirus/Readme.md, Analysis/Readme.md files

updated Cytoscape file

See merge request !276

Cleaned crosstalks code, Reactome added, new Cytoscape session file

See merge request !275

helper functions update

See merge request !274

one more correction

See merge request !273

add NLRP3 inflammasome

See merge request !272

Repo update

See merge request !271