Merge branch 'clean_casq_build' into 'master'

Reset the auto-built files

See merge request !280

Executable Modules/SBML_qual_build/sif/Apoptosis_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 FAS/FASL_complex POSITIVE FADD
 BAD/BBC3/BCL2L11_complex POSITIVE BAX
 BCL2/MCL1/BCL2L1_complex POSITIVE BAD/BBC3/BCL2L11_complex

Executable Modules/SBML_qual_build/sif/Apoptosis_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa2 POSITIVE sa9
 csa3 POSITIVE sa30
 csa11 POSITIVE csa3

Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 KNG1:KLKB1_complex POSITIVE Kininogen
 KNG1:KLKB1_complex POSITIVE Kallikrein
 KNG1:KLKB1_complex POSITIVE Bradykinin

Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa11 POSITIVE sa250
 csa11 POSITIVE sa251
 csa11 POSITIVE sa402

Executable Modules/SBML_qual_build/sif/ER_Stress_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 EIF2-P:GDP_complex POSITIVE ATF4_rna
 EIF2S1_phosphorylated POSITIVE EIF2-P:GDP_complex
 EIF2S1_phosphorylated POSITIVE EIF2S1

Executable Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 path_0_csa33 POSITIVE path_0_sa106
 path_0_sa87 POSITIVE path_0_csa33
 path_0_sa87 POSITIVE path_0_sa90

Executable Modules/SBML_qual_build/sif/ETC_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 Complex_1_complex POSITIVE Complex_1_complex
 Complex_1_complex POSITIVE complex_2_complex_mitochondrial_matrix
 Complex_1_complex POSITIVE complex_3_complex

Executable Modules/SBML_qual_build/sif/ETC_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa20 POSITIVE csa20
 csa20 POSITIVE csa24
 csa20 POSITIVE csa34

Executable Modules/SBML_qual_build/sif/E_protein_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 histone_complex_nucleus POSITIVE Chromatin_organization_phenotype
 histone_complex_nucleus POSITIVE histone_complex_nucleus
 BRD4 POSITIVE histone_complex_nucleus

Executable Modules/SBML_qual_build/sif/E_protein_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa1 POSITIVE sa78
 csa2 POSITIVE csa1
 sa12 POSITIVE csa1

Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 Nrf2/Maf_complex POSITIVE HMOX1_rna
 NRF2_phosphorylated_nucleus POSITIVE Nrf2/Maf_complex
 NRF2_phosphorylated_nucleus POSITIVE SLC40A1_rna

Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa2 POSITIVE sa50
 sa43 POSITIVE csa2
 sa43 POSITIVE sa140

Executable Modules/SBML_qual_build/sif/IFN-lambda_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
 receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
 receptor_complex_complex_cell POSITIVE ISGF3_precursor_complex

Executable Modules/SBML_qual_build/sif/IFN-lambda_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa10 POSITIVE csa9
 csa10 POSITIVE csa11
 csa10 POSITIVE csa12

Executable Modules/SBML_qual_build/sif/Interferon1_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 IFNA1_IFNAR_complex POSITIVE JAK1_TYK2_complex
 IFNAR_complex POSITIVE IFNA1_IFNAR_complex
 IFNAR_complex POSITIVE IFNB1_IFNAR_complex

Executable Modules/SBML_qual_build/sif/Interferon1_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa2 POSITIVE csa9
 csa1 POSITIVE csa2
 csa1 POSITIVE csa3

Executable Modules/SBML_qual_build/sif/JNK_pathway_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 JNK_complex_cell POSITIVE AP-1_complex
 JNK_complex_cell POSITIVE BCL2_phosphorylated
 JNK_complex_cell POSITIVE ATF2_phosphorylated

Executable Modules/SBML_qual_build/sif/JNK_pathway_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa1 POSITIVE csa4
 csa1 POSITIVE sa12
 csa1 POSITIVE sa33

Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 AHR/L-KYN_complex POSITIVE Regulatory_T-cell_generation_phenotype
 L-Kynurenine_simple_molecule POSITIVE AHR/L-KYN_complex
 L-Kynurenine_simple_molecule POSITIVE H2O_simple_molecule_cell

Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa2 POSITIVE sa35
 sa17 POSITIVE csa2
 sa17 POSITIVE sa10

Executable Modules/SBML_qual_build/sif/NLRP3_Activation_stable.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 ASC:MAVS:TRAF3_complex_cell POSITIVE ASC:MAVS:TRAF3_complex_cell
 ASC:MAVS_complex POSITIVE ASC:MAVS:TRAF3_complex_cell
 TRAF3 POSITIVE ASC:MAVS:TRAF3_complex_cell

Executable Modules/SBML_qual_build/sif/NLRP3_Activation_stable_raw.sif

-# Generated by CaSQ v0.9.7
+# Generated by CaSQ v0.9.9
 csa29 POSITIVE csa27
 csa28 POSITIVE csa29
 sa99 POSITIVE csa29

Executable Modules/SBML_qual_build/sif/Nsp14_stable_raw.sif

-# Generated by CaSQ v0.8.6
-csa6 POSITIVE sa66
-csa6 POSITIVE sa116
-csa6 POSITIVE sa117
-sa403 POSITIVE csa6
-sa403 POSITIVE sa66
-sa403 POSITIVE sa116
-sa403 POSITIVE sa117
-sa403 POSITIVE sa412
-sa120 POSITIVE csa6
-csa7 POSITIVE sa1
-csa7 POSITIVE sa26
-csa7 POSITIVE sa49
-csa7 POSITIVE sa51
-sa35 POSITIVE csa7
-sa55 POSITIVE csa7
-sa55 POSITIVE sa1
-sa55 POSITIVE sa26
-sa55 POSITIVE sa49
-sa55 POSITIVE sa51
-csa8 POSITIVE sa204
-csa8 POSITIVE sa206
-csa8 POSITIVE sa207
-sa410 POSITIVE csa8
-sa209 POSITIVE csa8
-sa209 POSITIVE sa204
-sa209 POSITIVE sa206
-sa209 POSITIVE sa207
-sa209 POSITIVE sa411
-sa1 POSITIVE sa2
-sa20 POSITIVE sa1
-sa20 POSITIVE sa26
-sa25 POSITIVE sa1
-sa25 POSITIVE sa26
-sa24 POSITIVE sa1
-sa24 POSITIVE sa26
-sa57 POSITIVE sa1
-sa57 POSITIVE sa26
-sa27 POSITIVE sa1
-sa27 POSITIVE sa30
-sa27 POSITIVE sa31
-sa29 POSITIVE sa1
-sa29 POSITIVE sa30
-sa29 POSITIVE sa31
-sa28 POSITIVE sa1
-sa28 POSITIVE sa30
-sa28 POSITIVE sa31
-sa33 POSITIVE sa1
-sa33 POSITIVE sa26
-sa34 POSITIVE sa1
-sa34 POSITIVE sa26
-sa58 NEGATIVE sa1
-sa58 NEGATIVE sa26
-sa58 NEGATIVE sa49
-sa58 NEGATIVE sa51
-sa49 POSITIVE sa1
-sa49 POSITIVE sa51
-sa50 POSITIVE sa1
-sa50 POSITIVE sa51
-sa53 POSITIVE sa1
-sa53 POSITIVE sa49
-sa54 POSITIVE sa1
-sa54 POSITIVE sa49
-sa2 POSITIVE sa4
-sa2 POSITIVE sa7
-sa3 POSITIVE sa2
-sa4 POSITIVE sa8
-sa4 POSITIVE sa11
-sa6 POSITIVE sa4
-sa6 POSITIVE sa7
-sa5 POSITIVE sa4
-sa5 POSITIVE sa7
-sa8 POSITIVE sa20
-sa8 POSITIVE sa22
-sa10 POSITIVE sa8
-sa10 POSITIVE sa11
-sa10 POSITIVE sa13
-sa9 POSITIVE sa8
-sa9 POSITIVE sa11
-sa19 POSITIVE sa8
-sa18 POSITIVE sa11
-sa18 POSITIVE sa13
-sa12 POSITIVE sa11
-sa12 POSITIVE sa13
-sa21 POSITIVE sa20
-sa21 POSITIVE sa22
-csa1 POSITIVE sa20
-csa1 POSITIVE sa22
-sa70 POSITIVE sa29
-sa70 POSITIVE sa66
-sa70 POSITIVE sa69
-sa70 POSITIVE sa77
-sa70 POSITIVE sa78
-sa70 POSITIVE sa79
-sa70 POSITIVE sa97
-sa70 POSITIVE sa116
-sa70 POSITIVE sa117
-sa70 POSITIVE sa123
-sa70 POSITIVE sa124
-sa76 POSITIVE sa29
-sa76 POSITIVE sa77
-sa76 POSITIVE sa78
-sa75 POSITIVE sa29
-sa75 POSITIVE sa77
-sa75 POSITIVE sa78
-sa30 POSITIVE sa29
-sa30 POSITIVE sa79
-sa80 POSITIVE sa29
-sa80 POSITIVE sa79
-sa66 POSITIVE sa69
-sa66 POSITIVE sa109
-sa137 POSITIVE sa66
-sa137 POSITIVE sa72
-sa137 POSITIVE sa107
-sa137 POSITIVE sa141
-sa137 POSITIVE sa142
-sa137 POSITIVE sa143
-sa106 POSITIVE sa66
-sa106 POSITIVE sa107
-sa144 POSITIVE sa66
-sa144 POSITIVE sa107
-sa68 POSITIVE sa66
-sa68 POSITIVE sa69
-sa68 POSITIVE sa102
-sa68 POSITIVE sa103
-sa68 POSITIVE sa112
-sa111 POSITIVE sa66
-sa111 POSITIVE sa112
-sa113 POSITIVE sa66
-sa113 POSITIVE sa112
-sa115 POSITIVE sa66
-sa115 POSITIVE sa116
-sa115 POSITIVE sa117
-sa119 POSITIVE sa66
-sa119 POSITIVE sa116
-sa119 POSITIVE sa117
-sa122 POSITIVE sa66
-sa122 POSITIVE sa123
-sa122 POSITIVE sa124
-sa121 POSITIVE sa66
-sa121 POSITIVE sa123
-sa121 POSITIVE sa124
-sa69 POSITIVE sa68
-sa69 POSITIVE sa70
-sa69 POSITIVE sa90
-sa69 POSITIVE sa99
-sa98 POSITIVE sa68
-sa98 POSITIVE sa99
-sa100 POSITIVE sa68
-sa100 POSITIVE sa99
-sa96 POSITIVE sa69
-sa96 POSITIVE sa97
-sa94 POSITIVE sa69
-sa94 POSITIVE sa97
-sa95 POSITIVE sa69
-sa95 POSITIVE sa97
-sa101 POSITIVE sa69
-sa101 POSITIVE sa102
-sa101 POSITIVE sa103
-sa104 POSITIVE sa69
-sa104 POSITIVE sa102
-sa104 POSITIVE sa103
-sa110 POSITIVE sa69
-sa110 POSITIVE sa72
-sa110 POSITIVE sa109
-sa110 POSITIVE sa135
-sa110 POSITIVE sa136
-sa110 POSITIVE sa141
-sa110 POSITIVE sa142
-sa110 POSITIVE sa143
-sa110 POSITIVE sa153
-sa110 POSITIVE sa154
-sa110 POSITIVE sa157
-sa108 POSITIVE sa69
-sa108 POSITIVE sa109
-sa71 POSITIVE sa70
-sa71 POSITIVE sa82
-sa71 POSITIVE sa83
-sa71 POSITIVE sa86
-sa81 POSITIVE sa70
-sa81 POSITIVE sa82
-sa81 POSITIVE sa83
-sa81 POSITIVE sa86
-sa85 POSITIVE sa70
-sa85 POSITIVE sa82
-sa85 POSITIVE sa83
-sa85 POSITIVE sa86
-sa87 POSITIVE sa70
-sa87 POSITIVE sa82
-sa87 POSITIVE sa83
-sa87 POSITIVE sa86
-sa84 POSITIVE sa70
-sa84 POSITIVE sa82
-sa84 POSITIVE sa83
-sa84 POSITIVE sa86
-sa88 POSITIVE sa70
-sa88 POSITIVE sa90
-sa89 POSITIVE sa70
-sa89 POSITIVE sa90
-sa91 POSITIVE sa70
-sa91 POSITIVE sa71
-sa91 POSITIVE sa90
-sa91 POSITIVE sa130
-sa92 POSITIVE sa70
-sa92 POSITIVE sa71
-sa92 POSITIVE sa90
-sa92 POSITIVE sa130
-sa93 POSITIVE sa70
-sa93 POSITIVE sa71
-sa93 POSITIVE sa90
-sa93 POSITIVE sa130
-sa72 POSITIVE sa71
-sa72 POSITIVE sa130
-sa129 POSITIVE sa71
-sa129 POSITIVE sa130
-sa128 POSITIVE sa71
-sa128 POSITIVE sa130
-sa131 POSITIVE sa72
-sa131 POSITIVE sa135
-sa131 POSITIVE sa136
-sa134 POSITIVE sa72
-sa134 POSITIVE sa135
-sa134 POSITIVE sa136
-sa133 POSITIVE sa72
-sa133 POSITIVE sa135
-sa133 POSITIVE sa136
-sa132 POSITIVE sa72
-sa132 POSITIVE sa135
-sa132 POSITIVE sa136
-sa140 POSITIVE sa72
-sa140 POSITIVE sa141
-sa140 POSITIVE sa142
-sa140 POSITIVE sa143
-sa139 POSITIVE sa72
-sa139 POSITIVE sa141
-sa139 POSITIVE sa142
-sa139 POSITIVE sa143
-sa138 POSITIVE sa72
-sa138 POSITIVE sa141
-sa138 POSITIVE sa142
-sa138 POSITIVE sa143
-sa146 POSITIVE sa110
-sa146 POSITIVE sa152
-sa150 POSITIVE sa110
-sa150 POSITIVE sa152
-sa148 POSITIVE sa110
-sa148 POSITIVE sa152
-sa149 POSITIVE sa110
-sa149 POSITIVE sa152
-sa151 POSITIVE sa110
-sa151 POSITIVE sa152
-sa145 POSITIVE sa146
-sa147 POSITIVE sa146
-sa153 POSITIVE sa159
-sa153 POSITIVE sa163
-sa153 POSITIVE sa164
-sa153 POSITIVE sa165
-sa156 POSITIVE sa153
-sa156 POSITIVE sa154
-sa156 POSITIVE sa157
-sa155 POSITIVE sa153
-sa155 POSITIVE sa154
-sa155 POSITIVE sa157
-sa158 POSITIVE sa153
-sa158 POSITIVE sa154
-sa158 POSITIVE sa157
-sa159 POSITIVE sa166
-sa159 POSITIVE sa168
-sa159 POSITIVE sa169
-sa161 POSITIVE sa159
-sa161 POSITIVE sa163
-sa161 POSITIVE sa164
-sa161 POSITIVE sa165
-sa162 POSITIVE sa159
-sa162 POSITIVE sa163
-sa162 POSITIVE sa164
-sa162 POSITIVE sa165
-sa160 POSITIVE sa159
-sa160 POSITIVE sa163
-sa160 POSITIVE sa164
-sa160 POSITIVE sa165
-sa160 POSITIVE sa166
-sa160 POSITIVE sa168
-sa160 POSITIVE sa169
-sa160 POSITIVE sa179
-sa160 POSITIVE sa181
-sa160 POSITIVE sa182
-sa160 POSITIVE sa183
-sa166 POSITIVE sa170
-sa166 POSITIVE sa175
-sa166 POSITIVE sa176
-sa166 POSITIVE sa177
-sa166 POSITIVE sa178
-sa167 POSITIVE sa166
-sa167 POSITIVE sa168
-sa167 POSITIVE sa169
-sa170 POSITIVE sa179
-sa170 POSITIVE sa181
-sa170 POSITIVE sa182
-sa170 POSITIVE sa183
-sa173 POSITIVE sa170
-sa173 POSITIVE sa175
-sa173 POSITIVE sa176
-sa173 POSITIVE sa177
-sa173 POSITIVE sa178
-sa174 POSITIVE sa170
-sa174 POSITIVE sa175
-sa174 POSITIVE sa176
-sa174 POSITIVE sa177
-sa174 POSITIVE sa178
-sa172 POSITIVE sa170
-sa172 POSITIVE sa175
-sa172 POSITIVE sa176
-sa172 POSITIVE sa177
-sa172 POSITIVE sa178
-sa171 POSITIVE sa170
-sa171 POSITIVE sa175
-sa171 POSITIVE sa176
-sa171 POSITIVE sa177
-sa171 POSITIVE sa178
-sa179 POSITIVE sa184
-sa179 POSITIVE sa187
-sa179 POSITIVE sa188
-sa180 POSITIVE sa179
-sa180 POSITIVE sa181
-sa180 POSITIVE sa182
-sa180 POSITIVE sa183
-sa184 POSITIVE sa189
-sa184 POSITIVE sa190
-sa184 POSITIVE sa192
-sa184 POSITIVE sa193
-sa186 POSITIVE sa184
-sa186 POSITIVE sa187
-sa186 POSITIVE sa188
-sa185 POSITIVE sa184
-sa185 POSITIVE sa187
-sa185 POSITIVE sa188
-sa185 POSITIVE sa189
-sa185 POSITIVE sa190
-sa185 POSITIVE sa192
-sa185 POSITIVE sa193
-sa189 POSITIVE sa195
-sa189 POSITIVE sa196
-sa191 POSITIVE sa189
-sa191 POSITIVE sa190
-sa191 POSITIVE sa192
-sa191 POSITIVE sa193
-sa194 POSITIVE sa189
-sa194 POSITIVE sa190
-sa194 POSITIVE sa192
-sa194 POSITIVE sa193
-sa195 POSITIVE sa198
-sa195 POSITIVE sa200
-sa197 POSITIVE sa195
-sa197 POSITIVE sa196
-sa198 POSITIVE sa202
-sa198 POSITIVE sa203
-sa201 POSITIVE sa198
-sa201 POSITIVE sa200
-sa199 POSITIVE sa198
-sa199 POSITIVE sa200
-sa199 POSITIVE sa202
-sa199 POSITIVE sa203
-sa202 POSITIVE sa204
-sa202 POSITIVE sa206
-sa202 POSITIVE sa207
-sa202 POSITIVE sa215
-sa202 POSITIVE sa295
-sa202 POSITIVE sa297
-sa202 POSITIVE sa298
-sa202 POSITIVE sa313
-sa202 POSITIVE sa314
-sa301 POSITIVE sa202
-sa301 POSITIVE sa307
-sa301 POSITIVE sa333
-sa301 POSITIVE sa345
-sa301 POSITIVE sa352
-sa301 POSITIVE sa388
-sa302 POSITIVE sa202
-sa302 POSITIVE sa307
-sa303 POSITIVE sa202
-sa303 POSITIVE sa307
-sa305 POSITIVE sa202
-sa305 POSITIVE sa307
-sa304 POSITIVE sa202
-sa304 POSITIVE sa307
-sa306 POSITIVE sa202
-sa306 POSITIVE sa307
-sa317 POSITIVE sa202
-sa317 POSITIVE sa309
-sa317 POSITIVE sa322
-sa317 POSITIVE sa325
-sa317 POSITIVE sa331
-sa317 POSITIVE sa355
-sa317 POSITIVE sa356
-sa330 POSITIVE sa202
-sa330 POSITIVE sa331
-sa332 POSITIVE sa202
-sa332 POSITIVE sa331
-sa204 POSITIVE sa215
-sa204 POSITIVE sa220
-sa204 POSITIVE sa221
-sa204 POSITIVE sa222
-sa204 POSITIVE sa223
-sa204 POSITIVE sa224
-sa204 POSITIVE sa308
-sa204 POSITIVE sa311
-sa205 POSITIVE sa204
-sa205 POSITIVE sa206
-sa205 POSITIVE sa207
-sa208 POSITIVE sa204
-sa208 POSITIVE sa206
-sa208 POSITIVE sa207
-sa210 POSITIVE sa204
-sa210 POSITIVE sa206
-sa210 POSITIVE sa207
-sa213 NEGATIVE sa204
-sa213 NEGATIVE sa206
-sa213 NEGATIVE sa207
-sa212 NEGATIVE sa204
-sa212 NEGATIVE sa206
-sa212 NEGATIVE sa207
-sa214 NEGATIVE sa204
-sa214 NEGATIVE sa206
-sa214 NEGATIVE sa207
-sa215 POSITIVE sa225
-sa215 POSITIVE sa228
-sa215 POSITIVE sa257
-sa215 POSITIVE sa273
-sa219 POSITIVE sa215
-sa219 POSITIVE sa220
-sa219 POSITIVE sa221
-sa219 POSITIVE sa222
-sa219 POSITIVE sa223
-sa219 POSITIVE sa224
-sa219 POSITIVE sa308
-sa219 POSITIVE sa311
-sa217 POSITIVE sa215
-sa217 POSITIVE sa220
-sa217 POSITIVE sa221
-sa217 POSITIVE sa222
-sa217 POSITIVE sa223
-sa217 POSITIVE sa224
-sa218 POSITIVE sa215
-sa218 POSITIVE sa220
-sa218 POSITIVE sa221
-sa218 POSITIVE sa222