Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Menu
Open sidebar
COVID-19
models
Commits
c351e00c
Commit
c351e00c
authored
Apr 01, 2021
by
cylon-x
🤖
Browse files
Update models
parent
f239e6df
Pipeline
#39216
passed with stage
in 52 seconds
Changes
60
Pipelines
1
Expand all
Hide whitespace changes
Inline
Side-by-side
Executable Modules/SBML_qual_build/sbml/Apoptosis_stable.sbml
View file @
c351e00c
This diff is collapsed.
Click to expand it.
Executable Modules/SBML_qual_build/sbml/Coagulation-pathway_stable.sbml
View file @
c351e00c
...
...
@@ -802,41 +802,6 @@
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D010446"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:F12&KLKB1|F10&F9a&!Antithrombin|F8&Thrombin_blood_active&!PROC|Bradykinin&ACE"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s631"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"F11"
qual:constant=
"false"
qual:id=
"sa172"
><annotation><rdf:RDF>
...
...
@@ -1100,21 +1065,6 @@
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:9606"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:F2"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D013917"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:9606"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:Prothrombin&F5a:F10a_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s632"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"PROC"
qual:constant=
"false"
qual:id=
"sa205"
><annotation><rdf:RDF>
...
...
@@ -1143,76 +1093,6 @@
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:2697049"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D012327"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:SARS-CoV-2 infection_phenotype"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s633"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"D-dimer"
qual:constant=
"false"
qual:id=
"sa210"
><annotation><rdf:RDF>
...
...
@@ -1270,26 +1150,6 @@
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:9606"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:PLG"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:mesh:D005341"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:brenda:3.4.21.7"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:taxonomy:9606"
/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:PLAT_blood_active|PLAU|F11a|KLKB1&Plasminogen"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s634"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"PLAT_blood_active"
qual:constant=
"false"
qual:id=
"sa213"
><annotation><rdf:RDF>
...
...
Executable Modules/SBML_qual_build/sbml/ER_Stress_stable.sbml
View file @
c351e00c
...
...
@@ -379,21 +379,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ATF6"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ATF6"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ATF6"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ATF6"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ATF6_endoplasmic reticulum&ER_space_Stress_phenotype&!retrograde_space_transport_space_from_space_ER_space_to_space_cytosol_phenotype|ATF6_Golgi apparatus&MBTPS2|ATF6_Golgi apparatus&MBTPS1"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa57"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"DDIT3_phosphorylated"
qual:constant=
"false"
qual:id=
"path_0_sa630"
><annotation><rdf:RDF>
...
...
@@ -403,11 +388,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:DDIT3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:DDIT3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:DDIT3&MAPK14_phosphorylated|DDIT3&MAPK14_phosphorylated"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa630"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"BAK1"
qual:constant=
"true"
qual:id=
"path_0_sa459"
><annotation><rdf:RDF>
...
...
@@ -435,21 +415,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:TRAF2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:TRAF2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:TRAF2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:TRAF2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:TRAF2&TRAF2:ERN1_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa204"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Ca2+space_ER_space_depletion_phenotype"
qual:constant=
"true"
qual:id=
"path_1_sa60"
><annotation><rdf:RDF>
...
...
@@ -511,11 +476,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc:5238"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc:5238"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ATF6:HSPA5_complex&Unfolded_space_protein|ER_space_stress_phenotype|Ca2+space_ER_space_depletion_phenotype&SIGMAR1:HSPA5_complex|HSPA5_rna&ER_space_stress_phenotype&!ACE2"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa4"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"ITPR"
qual:constant=
"false"
qual:id=
"path_0_sa583"
><annotation><rdf:RDF>
...
...
@@ -535,21 +495,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ITPR2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ITPR1"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ITPR3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ITPR2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:TMBIM6|ERO1A_endoplasmic reticulum&ITPR"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa583"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"SQSTM1_space_"
qual:constant=
"true"
qual:id=
"path_0_sa238"
><annotation><rdf:RDF>
...
...
@@ -568,11 +513,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A57600"
/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:is>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A57600"
/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:Ternary_space_Complex_complex&GDP_simple_molecule"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa95"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"ITPR3"
qual:constant=
"true"
qual:id=
"path_1_sa88"
><annotation><rdf:RDF>
...
...
@@ -688,11 +628,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:DNAJC3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:DNAJC3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:DNAJC3_rna"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa624"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"DDIT3_rna"
qual:constant=
"false"
qual:id=
"path_0_sa71"
><annotation><rdf:RDF>
...
...
@@ -747,11 +682,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A29108"
/>
</rdf:Bag>
</bqmodel:is>
<bqmodel:is>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A29108"
/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ITPR3:HSPA9:VDAC1_complex|ITPR3:HSPA9:VDAC1_complex|SIGMAR1:ITPR3_complex&Ca2+_ion_endoplasmic reticulum"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_1_sa55"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"ERO1A_endoplasmic reticulum"
qual:constant=
"false"
qual:id=
"path_0_sa625"
><annotation><rdf:RDF>
...
...
@@ -761,11 +691,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ERO1A"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:ERO1A"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ERO1A_cell"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa625"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"BCL2L11_endoplasmic reticulum"
qual:constant=
"true"
qual:id=
"path_0_sa475"
><annotation><rdf:RDF>
...
...
@@ -1046,11 +971,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:CDK5"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:CDK5"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:CDK5&ER_space_Stress_phenotype"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa147"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"MAPK14_phosphorylated"
qual:constant=
"false"
qual:id=
"path_0_sa43"
><annotation><rdf:RDF>
...
...
@@ -1060,11 +980,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:MAPK14"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:MAPK14"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:MAPK14&MAP3K5_phosphorylated"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa43"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"ERO1A_cell"
qual:constant=
"false"
qual:id=
"path_0_sa121"
><annotation><rdf:RDF>
...
...
@@ -1111,11 +1026,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:EIF2AK2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:EIF2AK2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:EIF2AK2&presence_space_of_space_dsRNA_phenotype&!DNAJC3"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa210"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Ca2+_ion_mitochondrial matrix"
qual:constant=
"false"
qual:id=
"path_1_sa64"
><annotation><rdf:RDF>
...
...
@@ -1230,21 +1140,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:XBP1"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:XBP1"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:XBP1"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:XBP1"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:XBP1_rna"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa626"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"MCU2"
qual:constant=
"true"
qual:id=
"path_1_sa33"
><annotation><rdf:RDF>
...
...
@@ -1300,11 +1195,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:TRIB3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:TRIB3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:TRIB3_rna"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa486"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"BBC3"
qual:constant=
"true"
qual:id=
"path_0_sa476"
><annotation><rdf:RDF>
...
...
@@ -1502,11 +1392,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A29108"
/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:is>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A29108"
/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:Ca2+_ion_endoplasmic reticulum"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa131"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"AP-1_phosphorylated_phosphorylated"
qual:constant=
"false"
qual:id=
"path_0_sa261"
><annotation><rdf:RDF>
...
...
@@ -1573,11 +1458,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A65180"
/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:is>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A65180"
/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:EIF2:GDP:Met-tRNA_complex&GTP_simple_molecule&EIF2B_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa100"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"PACS2_endoplasmic reticulum"
qual:constant=
"true"
qual:id=
"path_1_sa3"
><annotation><rdf:RDF>
...
...
@@ -1711,11 +1591,6 @@
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:DDIT3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:hgnc.symbol:DDIT3"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:DDIT3_rna"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s_id_path_0_sa629"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"MFN2_endoplasmic reticulum"
qual:constant=
"false"
qual:id=
"path_1_sa98"
><annotation><rdf:RDF>
...
...
@@ -2149,21 +2024,6 @@
<rdf:li
rdf:resource=
"urn:miriam:uniprot:W6A028"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:uniprot:P59594"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:uniprot:P0DTC2"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:uniprot:W6A028"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:S"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s263"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"HSPA5_default_compartment"
qual:constant=
"true"
qual:id=
"sa262"
><annotation><rdf:RDF>
...
...
Executable Modules/SBML_qual_build/sbml/ETC_stable.sbml
View file @
c351e00c
This diff is collapsed.
Click to expand it.
Executable Modules/SBML_qual_build/sbml/E_protein_stable.sbml
View file @
c351e00c
...
...
@@ -15,11 +15,6 @@
<rdf:li
rdf:resource=
"urn:miriam:ncbiprotein:BCD58755"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:ncbiprotein:BCD58755"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:E_nucleus"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s92"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"TBP"
qual:constant=
"false"
qual:id=
"sa17"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s82"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:TBP&BRD2"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s82"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"BRD2"
qual:constant=
"false"
qual:id=
"sa20"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s93"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:BRD2&!JQ-1_simple_molecule&!E_nucleus"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s93"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"E_cell"
qual:constant=
"true"
qual:id=
"sa22"
><annotation><rdf:RDF>
...
...
@@ -29,11 +24,6 @@
<rdf:li
rdf:resource=
"urn:miriam:ncbiprotein:BCD58755"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:ncbiprotein:BCD58755"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:E_cell"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s59"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"STOML3"
qual:constant=
"true"
qual:id=
"sa24"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s54"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:STOML3"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s54"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"ASIC1"
qual:constant=
"false"
qual:id=
"sa25"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s258"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:H+_ion"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s258"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"H+_ion"
qual:constant=
"true"
qual:id=
"sa26"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s23"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:H+_ion"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s23"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"PATJ"
qual:constant=
"false"
qual:id=
"sa28"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s298"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:PATJ"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s298"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"CRB3"
qual:constant=
"false"
qual:id=
"sa29"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s297"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:CRB3"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s297"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"MPP5"
qual:constant=
"false"
qual:id=
"sa30"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s296"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:MPP5"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s296"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"K+_ion"
qual:constant=
"false"
qual:id=
"sa66"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s286"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ATP1A:ATP1B:FXYDs_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s286"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Na+_ion"
qual:constant=
"false"
qual:id=
"sa67"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s291"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ATP1A:ATP1B:FXYDs_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s291"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Activity of sodium channels_phenotype"
qual:constant=
"false"
qual:id=
"sa73"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s37"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:ATP1A:ATP1B:FXYDs_complex|!STOML3|ASIC1 trimer:H+:STOML3_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s37"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Maintenance of tight junction_phenotype"
qual:constant=
"false"
qual:id=
"sa74"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s53"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:CRB3:PALS1:PATJ complex_complex|E-PALS1_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s53"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"RNA Polymerase II-dependent Transcription _phenotype"
qual:constant=
"false"
qual:id=
"sa77"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s270"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:P-TEFb_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s270"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Chromatin organization_phenotype"
qual:constant=
"false"
qual:id=
"sa78"
><annotation><rdf:RDF><rdf:Description
rdf:about=
"#s271"
><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:histone_complex_nucleus"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s271"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"JQ-1_simple_molecule"
qual:constant=
"true"
qual:id=
"sa79"
><annotation><rdf:RDF>
...
...
Executable Modules/SBML_qual_build/sbml/HMOX1_Pathway_stable.sbml
View file @
c351e00c
...
...
@@ -687,11 +687,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15379"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15379"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:O2_simple_molecule_cell"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s12"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"NADPH_simple_molecule"
qual:constant=
"true"
qual:id=
"sa25"
><annotation><rdf:RDF>
...
...
@@ -701,11 +696,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A16474"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A16474"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:NADPH_simple_molecule"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s13"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"H2O_simple_molecule_cell"
qual:constant=
"false"
qual:id=
"sa26"
><annotation><rdf:RDF>
...
...
@@ -715,41 +705,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15377"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:Heme_simple_molecule_cell&O2_simple_molecule_cell&NADPH_simple_molecule&HMOX1_cell_active|dALA_simple_molecule_cell&ALAD:Zn2+_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s14"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"NADP+_simple_molecule"
qual:constant=
"false"
qual:id=
"sa27"
><annotation><rdf:RDF>
...
...
@@ -759,11 +714,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A18009"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A18009"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:Heme_simple_molecule_cell&O2_simple_molecule_cell&NADPH_simple_molecule&HMOX1_cell_active|BLVRB|BLVRA:Zn2+_complex&Biliverdin_simple_molecule&NADPH_simple_molecule"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s15"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"Fe2+_ion_cell"
qual:constant=
"false"
qual:id=
"sa28"
><annotation><rdf:RDF>
...
...
@@ -773,11 +723,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A29033"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A29033"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:Heme_simple_molecule_cell&O2_simple_molecule_cell&NADPH_simple_molecule&HMOX1_cell_active|Fe2+_ion_default_compartment&SLC11A2|Fe2+_ion_cell|Fe2+_ion_endosome&MCOLN1"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s16"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"HMOX1_cell"
qual:constant=
"false"
qual:id=
"sa29"
><annotation><rdf:RDF>
...
...
@@ -923,11 +868,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15378"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15378"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:PRIN9_simple_molecule_mitochondrial matrix&Fe2+_ion_mitochondrial matrix&FECH&!Pb2+_ion"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s56"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"SUCC-CoA_simple_molecule"
qual:constant=
"true"
qual:id=
"sa65"
><annotation><rdf:RDF>
...
...
@@ -1009,11 +949,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15378"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15378"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:dALA_simple_molecule_cell&ALAD:Zn2+_complex"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s101"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"HMBL_simple_molecule"
qual:constant=
"false"
qual:id=
"sa105"
><annotation><rdf:RDF>
...
...
@@ -1113,11 +1048,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15379"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A15379"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:function:O2_simple_molecule_mitochondrion"
/></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li
rdf:resource=
"urn:casq:cdid:s125"
/></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies
qual:maxLevel=
"1"
qual:compartment=
"comp1"
qual:name=
"CO2_simple_molecule_mitochondrion"
qual:constant=
"false"
qual:id=
"sa122"
><annotation><rdf:RDF>
...
...
@@ -1136,11 +1066,6 @@
<rdf:li
rdf:resource=
"urn:miriam:obo.chebi:CHEBI%3A16240"
/>
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>