Skip to content

GitLab

Commit c351e00c authored by cylon-x's avatar cylon-x 🤖
Browse files

Update models

parent f239e6df
Pipeline #39216 passed with stage
in 52 seconds
Expand all Hide whitespace changes
Inline Side-by-side
Executable Modules/SBML_qual_build/sbml/Coagulation-pathway_stable.sbml
View file @ c351e00c
......@@ -802,41 +802,6 @@
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D010446" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:F12&amp;KLKB1|F10&amp;F9a&amp;!Antithrombin|F8&amp;Thrombin_blood_active&amp;!PROC|Bradykinin&amp;ACE" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s631" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="F11" qual:constant="false" qual:id="sa172"><annotation><rdf:RDF>
......@@ -1100,21 +1065,6 @@
<rdf:li rdf:resource="urn:miriam:taxonomy:9606" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:F2" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D013917" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:9606" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Prothrombin&amp;F5a:F10a_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s632" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="PROC" qual:constant="false" qual:id="sa205"><annotation><rdf:RDF>
......@@ -1143,76 +1093,6 @@
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:2697049" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D012327" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:SARS-CoV-2 infection_phenotype" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s633" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="D-dimer" qual:constant="false" qual:id="sa210"><annotation><rdf:RDF>
......@@ -1270,26 +1150,6 @@
<rdf:li rdf:resource="urn:miriam:taxonomy:9606" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:PLG" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D005341" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:brenda:3.4.21.7" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:9606" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:PLAT_blood_active|PLAU|F11a|KLKB1&amp;Plasminogen" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s634" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="PLAT_blood_active" qual:constant="false" qual:id="sa213"><annotation><rdf:RDF>
......
Executable Modules/SBML_qual_build/sbml/ER_Stress_stable.sbml
View file @ c351e00c
......@@ -379,21 +379,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ATF6" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ATF6" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ATF6" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ATF6" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATF6_endoplasmic reticulum&amp;ER_space_Stress_phenotype&amp;!retrograde_space_transport_space_from_space_ER_space_to_space_cytosol_phenotype|ATF6_Golgi apparatus&amp;MBTPS2|ATF6_Golgi apparatus&amp;MBTPS1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa57" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="DDIT3_phosphorylated" qual:constant="false" qual:id="path_0_sa630"><annotation><rdf:RDF>
......@@ -403,11 +388,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DDIT3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DDIT3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:DDIT3&amp;MAPK14_phosphorylated|DDIT3&amp;MAPK14_phosphorylated" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa630" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BAK1" qual:constant="true" qual:id="path_0_sa459"><annotation><rdf:RDF>
......@@ -435,21 +415,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TRAF2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TRAF2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TRAF2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TRAF2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TRAF2&amp;TRAF2:ERN1_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa204" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Ca2+space_ER_space_depletion_phenotype" qual:constant="true" qual:id="path_1_sa60"><annotation><rdf:RDF>
......@@ -511,11 +476,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc:5238" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:5238" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATF6:HSPA5_complex&amp;Unfolded_space_protein|ER_space_stress_phenotype|Ca2+space_ER_space_depletion_phenotype&amp;SIGMAR1:HSPA5_complex|HSPA5_rna&amp;ER_space_stress_phenotype&amp;!ACE2" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa4" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ITPR" qual:constant="false" qual:id="path_0_sa583"><annotation><rdf:RDF>
......@@ -535,21 +495,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR1" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ITPR2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TMBIM6|ERO1A_endoplasmic reticulum&amp;ITPR" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa583" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="SQSTM1_space_" qual:constant="true" qual:id="path_0_sa238"><annotation><rdf:RDF>
......@@ -568,11 +513,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A57600" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A57600" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Ternary_space_Complex_complex&amp;GDP_simple_molecule" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa95" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ITPR3" qual:constant="true" qual:id="path_1_sa88"><annotation><rdf:RDF>
......@@ -688,11 +628,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DNAJC3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DNAJC3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:DNAJC3_rna" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa624" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="DDIT3_rna" qual:constant="false" qual:id="path_0_sa71"><annotation><rdf:RDF>
......@@ -747,11 +682,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A29108" />
</rdf:Bag>
</bqmodel:is>
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A29108" />
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ITPR3:HSPA9:VDAC1_complex|ITPR3:HSPA9:VDAC1_complex|SIGMAR1:ITPR3_complex&amp;Ca2+_ion_endoplasmic reticulum" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_1_sa55" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ERO1A_endoplasmic reticulum" qual:constant="false" qual:id="path_0_sa625"><annotation><rdf:RDF>
......@@ -761,11 +691,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ERO1A" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:ERO1A" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ERO1A_cell" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa625" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BCL2L11_endoplasmic reticulum" qual:constant="true" qual:id="path_0_sa475"><annotation><rdf:RDF>
......@@ -1046,11 +971,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:CDK5" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:CDK5" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CDK5&amp;ER_space_Stress_phenotype" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa147" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="MAPK14_phosphorylated" qual:constant="false" qual:id="path_0_sa43"><annotation><rdf:RDF>
......@@ -1060,11 +980,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:MAPK14" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:MAPK14" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MAPK14&amp;MAP3K5_phosphorylated" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa43" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ERO1A_cell" qual:constant="false" qual:id="path_0_sa121"><annotation><rdf:RDF>
......@@ -1111,11 +1026,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:EIF2AK2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:EIF2AK2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:EIF2AK2&amp;presence_space_of_space_dsRNA_phenotype&amp;!DNAJC3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa210" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Ca2+_ion_mitochondrial matrix" qual:constant="false" qual:id="path_1_sa64"><annotation><rdf:RDF>
......@@ -1230,21 +1140,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:XBP1" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:XBP1" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:XBP1" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:XBP1" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:XBP1_rna" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa626" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="MCU2" qual:constant="true" qual:id="path_1_sa33"><annotation><rdf:RDF>
......@@ -1300,11 +1195,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TRIB3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TRIB3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TRIB3_rna" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa486" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BBC3" qual:constant="true" qual:id="path_0_sa476"><annotation><rdf:RDF>
......@@ -1502,11 +1392,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A29108" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A29108" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Ca2+_ion_endoplasmic reticulum" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa131" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="AP-1_phosphorylated_phosphorylated" qual:constant="false" qual:id="path_0_sa261"><annotation><rdf:RDF>
......@@ -1573,11 +1458,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A65180" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A65180" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:EIF2:GDP:Met-tRNA_complex&amp;GTP_simple_molecule&amp;EIF2B_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa100" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="PACS2_endoplasmic reticulum" qual:constant="true" qual:id="path_1_sa3"><annotation><rdf:RDF>
......@@ -1711,11 +1591,6 @@
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DDIT3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:DDIT3" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:DDIT3_rna" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s_id_path_0_sa629" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="MFN2_endoplasmic reticulum" qual:constant="false" qual:id="path_1_sa98"><annotation><rdf:RDF>
......@@ -2149,21 +2024,6 @@
<rdf:li rdf:resource="urn:miriam:uniprot:W6A028" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59594" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P0DTC2" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:W6A028" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:S" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s263" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="HSPA5_default_compartment" qual:constant="true" qual:id="sa262"><annotation><rdf:RDF>
......
Executable Modules/SBML_qual_build/sbml/E_protein_stable.sbml
View file @ c351e00c
......@@ -15,11 +15,6 @@
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:E_nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s92" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="TBP" qual:constant="false" qual:id="sa17"><annotation><rdf:RDF><rdf:Description rdf:about="#s82"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TBP&amp;BRD2" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s82" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BRD2" qual:constant="false" qual:id="sa20"><annotation><rdf:RDF><rdf:Description rdf:about="#s93"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BRD2&amp;!JQ-1_simple_molecule&amp;!E_nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s93" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="E_cell" qual:constant="true" qual:id="sa22"><annotation><rdf:RDF>
......@@ -29,11 +24,6 @@
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:E_cell" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s59" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="STOML3" qual:constant="true" qual:id="sa24"><annotation><rdf:RDF><rdf:Description rdf:about="#s54"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:STOML3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s54" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ASIC1" qual:constant="false" qual:id="sa25"><annotation><rdf:RDF><rdf:Description rdf:about="#s258"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H+_ion" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s258" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H+_ion" qual:constant="true" qual:id="sa26"><annotation><rdf:RDF><rdf:Description rdf:about="#s23"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H+_ion" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s23" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="PATJ" qual:constant="false" qual:id="sa28"><annotation><rdf:RDF><rdf:Description rdf:about="#s298"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:PATJ" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s298" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CRB3" qual:constant="false" qual:id="sa29"><annotation><rdf:RDF><rdf:Description rdf:about="#s297"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CRB3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s297" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="MPP5" qual:constant="false" qual:id="sa30"><annotation><rdf:RDF><rdf:Description rdf:about="#s296"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MPP5" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s296" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="K+_ion" qual:constant="false" qual:id="sa66"><annotation><rdf:RDF><rdf:Description rdf:about="#s286"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATP1A:ATP1B:FXYDs_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s286" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Na+_ion" qual:constant="false" qual:id="sa67"><annotation><rdf:RDF><rdf:Description rdf:about="#s291"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATP1A:ATP1B:FXYDs_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s291" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Activity of sodium channels_phenotype" qual:constant="false" qual:id="sa73"><annotation><rdf:RDF><rdf:Description rdf:about="#s37"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATP1A:ATP1B:FXYDs_complex|!STOML3|ASIC1 trimer:H+:STOML3_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s37" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Maintenance of tight junction_phenotype" qual:constant="false" qual:id="sa74"><annotation><rdf:RDF><rdf:Description rdf:about="#s53"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CRB3:PALS1:PATJ complex_complex|E-PALS1_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s53" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="RNA Polymerase II-dependent Transcription _phenotype" qual:constant="false" qual:id="sa77"><annotation><rdf:RDF><rdf:Description rdf:about="#s270"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:P-TEFb_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s270" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Chromatin organization_phenotype" qual:constant="false" qual:id="sa78"><annotation><rdf:RDF><rdf:Description rdf:about="#s271"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:histone_complex_nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s271" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="JQ-1_simple_molecule" qual:constant="true" qual:id="sa79"><annotation><rdf:RDF>
......
Executable Modules/SBML_qual_build/sbml/HMOX1_Pathway_stable.sbml
View file @ c351e00c
......@@ -687,11 +687,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15379" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15379" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:O2_simple_molecule_cell" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s12" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="NADPH_simple_molecule" qual:constant="true" qual:id="sa25"><annotation><rdf:RDF>
......@@ -701,11 +696,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A16474" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A16474" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:NADPH_simple_molecule" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s13" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H2O_simple_molecule_cell" qual:constant="false" qual:id="sa26"><annotation><rdf:RDF>
......@@ -715,41 +705,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15377" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Heme_simple_molecule_cell&amp;O2_simple_molecule_cell&amp;NADPH_simple_molecule&amp;HMOX1_cell_active|dALA_simple_molecule_cell&amp;ALAD:Zn2+_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s14" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="NADP+_simple_molecule" qual:constant="false" qual:id="sa27"><annotation><rdf:RDF>
......@@ -759,11 +714,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A18009" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A18009" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Heme_simple_molecule_cell&amp;O2_simple_molecule_cell&amp;NADPH_simple_molecule&amp;HMOX1_cell_active|BLVRB|BLVRA:Zn2+_complex&amp;Biliverdin_simple_molecule&amp;NADPH_simple_molecule" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s15" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Fe2+_ion_cell" qual:constant="false" qual:id="sa28"><annotation><rdf:RDF>
......@@ -773,11 +723,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A29033" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A29033" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Heme_simple_molecule_cell&amp;O2_simple_molecule_cell&amp;NADPH_simple_molecule&amp;HMOX1_cell_active|Fe2+_ion_default_compartment&amp;SLC11A2|Fe2+_ion_cell|Fe2+_ion_endosome&amp;MCOLN1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s16" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="HMOX1_cell" qual:constant="false" qual:id="sa29"><annotation><rdf:RDF>
......@@ -923,11 +868,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15378" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15378" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:PRIN9_simple_molecule_mitochondrial matrix&amp;Fe2+_ion_mitochondrial matrix&amp;FECH&amp;!Pb2+_ion" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s56" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="SUCC-CoA_simple_molecule" qual:constant="true" qual:id="sa65"><annotation><rdf:RDF>
......@@ -1009,11 +949,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15378" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15378" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:dALA_simple_molecule_cell&amp;ALAD:Zn2+_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s101" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="HMBL_simple_molecule" qual:constant="false" qual:id="sa105"><annotation><rdf:RDF>
......@@ -1113,11 +1048,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15379" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A15379" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:O2_simple_molecule_mitochondrion" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s125" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CO2_simple_molecule_mitochondrion" qual:constant="false" qual:id="sa122"><annotation><rdf:RDF>
......@@ -1136,11 +1066,6 @@
<rdf:li rdf:resource="urn:miriam:obo.chebi:CHEBI%3A16240" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>