Merge branch 'tmpBranch' into repo_update

Executable Modules/SBML_qual_build/sif/Apoptosis_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 FAS/FASL_complex POSITIVE FADD
 BAD/BBC3/BCL2L11_complex POSITIVE BAX
 BCL2/MCL1/BCL2L1_complex POSITIVE BAD/BBC3/BCL2L11_complex

Executable Modules/SBML_qual_build/sif/Apoptosis_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa2 POSITIVE sa9
 csa3 POSITIVE sa30
 csa11 POSITIVE csa3

Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 KNG1:KLKB1_complex POSITIVE Kininogen
 KNG1:KLKB1_complex POSITIVE Kallikrein
 KNG1:KLKB1_complex POSITIVE Bradykinin

Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa11 POSITIVE sa250
 csa11 POSITIVE sa251
 csa11 POSITIVE sa402

Executable Modules/SBML_qual_build/sif/ER_Stress_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 EIF2-P:GDP_complex POSITIVE ATF4_rna
 EIF2S1_phosphorylated POSITIVE EIF2-P:GDP_complex
 EIF2S1_phosphorylated POSITIVE EIF2S1

Executable Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 path_0_csa33 POSITIVE path_0_sa106
 path_0_sa87 POSITIVE path_0_csa33
 path_0_sa87 POSITIVE path_0_sa90

Executable Modules/SBML_qual_build/sif/ETC_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 Complex_1_complex POSITIVE Complex_1_complex
 Complex_1_complex POSITIVE complex_2_complex_mitochondrial_matrix
 Complex_1_complex POSITIVE complex_3_complex

Executable Modules/SBML_qual_build/sif/ETC_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa20 POSITIVE csa20
 csa20 POSITIVE csa24
 csa20 POSITIVE csa34

Executable Modules/SBML_qual_build/sif/E_protein_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 histone_complex_Nucleus POSITIVE Chromatin_organization_phenotype
 histone_complex_Nucleus POSITIVE histone_complex_Nucleus
 BRD4 POSITIVE histone_complex_Nucleus

Executable Modules/SBML_qual_build/sif/E_protein_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa1 POSITIVE sa78
 csa2 POSITIVE csa1
 sa12 POSITIVE csa1

Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 Nrf2/Maf_complex POSITIVE HMOX1_rna
 NRF2_phosphorylated_Nucleus POSITIVE Nrf2/Maf_complex
 NRF2_phosphorylated_Nucleus POSITIVE SLC40A1_rna

Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa2 POSITIVE sa50
 sa43 POSITIVE csa2
 sa43 POSITIVE sa140

Executable Modules/SBML_qual_build/sif/IFN-lambda_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
 receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
 receptor_complex_complex_cell POSITIVE ISGF3_precursor_complex

Executable Modules/SBML_qual_build/sif/IFN-lambda_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa10 POSITIVE csa9
 csa10 POSITIVE csa11
 csa10 POSITIVE csa12

Executable Modules/SBML_qual_build/sif/Interferon1_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 IFNA1_IFNAR_complex POSITIVE JAK1_TYK2_complex
 IFNAR_complex POSITIVE IFNA1_IFNAR_complex
 IFNAR_complex POSITIVE IFNB1_IFNAR_complex

Executable Modules/SBML_qual_build/sif/Interferon1_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa2 POSITIVE csa9
 csa1 POSITIVE csa2
 csa1 POSITIVE csa3

Executable Modules/SBML_qual_build/sif/JNK_pathway_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 JNK_complex_Cytoplasm POSITIVE AP-1_complex
 JNK_complex_Cytoplasm POSITIVE BCL2_phosphorylated
 JNK_complex_Cytoplasm POSITIVE ATF2_phosphorylated

Executable Modules/SBML_qual_build/sif/JNK_pathway_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa1 POSITIVE csa4
 csa1 POSITIVE sa12
 csa1 POSITIVE sa33

Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 AHR/L-KYN_complex POSITIVE Regulatory_T-cell_generation_phenotype
 L-Kynurenine_simple_molecule POSITIVE AHR/L-KYN_complex
 L-Kynurenine_simple_molecule POSITIVE H2O_simple_molecule_Cytosol

Executable Modules/SBML_qual_build/sif/Kynurenine_pathway_stable_raw.sif

-# Generated by CaSQ v0.9.6
+# Generated by CaSQ v0.9.7
 csa2 POSITIVE sa35
 sa17 POSITIVE csa2
 sa17 POSITIVE sa10