improved annotations, new pathway

a255a567 · Marek Ostaszewski · ef49e551 · a255a567 · a255a567 · a255a567
Commit a255a567 authored Feb 02, 2021 by Marek Ostaszewski
--- a/Curation/Apoptosis/Apoptosis_stable.xml
+++ b/Curation/Apoptosis/Apoptosis_stable.xml
@@ -1782,7 +1782,6 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:protein id="pr28" name="Orf3a" type="GENERIC"/>
 <celldesigner:protein id="pr29" name="MAPK14" type="GENERIC"/>
 <celldesigner:protein id="pr32" name="E" type="GENERIC"/>
-<celldesigner:protein id="pr33" name="Orf7a" type="GENERIC"/>
 <celldesigner:protein id="pr34" name="M" type="GENERIC"/>
 <celldesigner:protein id="pr36" name="Orf3b" type="GENERIC"/>
 <celldesigner:protein id="pr37" name="Orf8a" type="GENERIC"/>
@@ -1790,6 +1789,7 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:protein id="pr39" name="Orf6" type="GENERIC"/>
 <celldesigner:protein id="pr40" name="S" type="GENERIC"/>
 <celldesigner:protein id="pr41" name="Orf9b" type="GENERIC"/>
+<celldesigner:protein id="pr33" name="Orf7a" type="GENERIC"/>
 </celldesigner:listOfProteins>
 <celldesigner:listOfGenes/>
 <celldesigner:listOfRNAs/>
@@ -2056,6 +2056,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:catalyzed reaction="re19"/>
 </celldesigner:listOfCatalyzedReactions>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s45">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59637"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s94" id="s94" name="E" compartment="c5" initialAmount="0">
@@ -2070,20 +2079,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:catalyzed reaction="re23"/>
 </celldesigner:listOfCatalyzedReactions>
 </celldesigner:extension>
-</annotation>
-</species>
-<species metaid="s39" id="s39" name="Orf7a" compartment="c5" initialAmount="0">
-<annotation>
-<celldesigner:extension>
-<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
-<celldesigner:speciesIdentity>
-<celldesigner:class>PROTEIN</celldesigner:class>
-<celldesigner:proteinReference>pr33</celldesigner:proteinReference>
-</celldesigner:speciesIdentity>
-<celldesigner:listOfCatalyzedReactions>
-<celldesigner:catalyzed reaction="re23"/>
-</celldesigner:listOfCatalyzedReactions>
-</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s94">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59637"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s38" id="s38" name="M" compartment="c5" initialAmount="0">
@@ -2214,6 +2218,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:proteinReference>pr36</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s144">
+<bqmodel:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59633"/>
+</rdf:Bag>
+</bqmodel:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s145" id="s145" name="Orf8a" compartment="c5" initialAmount="0">
@@ -2225,6 +2238,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:proteinReference>pr37</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s145">
+<bqmodel:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q7TFA0"/>
+</rdf:Bag>
+</bqmodel:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s146" id="s146" name="N" compartment="c5" initialAmount="0">
@@ -2236,6 +2258,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:proteinReference>pr38</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s146">
+<bqmodel:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59595"/>
+</rdf:Bag>
+</bqmodel:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s147" id="s147" name="Orf6" compartment="c5" initialAmount="0">
@@ -2247,6 +2278,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:proteinReference>pr39</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s147">
+<bqmodel:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59634"/>
+</rdf:Bag>
+</bqmodel:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s148" id="s148" name="S" compartment="c5" initialAmount="0">
@@ -2258,6 +2298,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:proteinReference>pr40</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s148">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59594"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s149" id="s149" name="Orf9b" compartment="c5" initialAmount="0">
@@ -2269,6 +2318,15 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 <celldesigner:proteinReference>pr41</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s149">
+<bqmodel:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:P59636"/>
+</rdf:Bag>
+</bqmodel:is>
+</rdf:Description>
+</rdf:RDF>
 </annotation>
 </species>
 <species metaid="s150" id="s150" name="BAD" compartment="c5" initialAmount="0">
@@ -2361,6 +2419,38 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 </celldesigner:extension>
 </annotation>
 </species>
+<species metaid="s39" id="s39" name="Orf7a" compartment="c5" initialAmount="0" charge="0">
+<notes>
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<title/>
+</head>
+<body>COVID19 Disease Map
+</body>
+</html>
+</notes>
+<annotation>
+<celldesigner:extension>
+<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
+<celldesigner:speciesIdentity>
+<celldesigner:class>PROTEIN</celldesigner:class>
+<celldesigner:proteinReference>pr33</celldesigner:proteinReference>
+</celldesigner:speciesIdentity>
+<celldesigner:listOfCatalyzedReactions>
+<celldesigner:catalyzed reaction="re23"/>
+</celldesigner:listOfCatalyzedReactions>
+</celldesigner:extension>
+<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+<rdf:Description rdf:about="#s39">
+<bqbiol:is>
+<rdf:Bag>
+<rdf:li rdf:resource="urn:miriam:uniprot:Q19QW4"/>
+</rdf:Bag>
+</bqbiol:is>
+</rdf:Description>
+</rdf:RDF>
+</annotation>
+</species>
 </listOfSpecies>
 <listOfReactions>
 <reaction metaid="re1" id="re1" reversible="false">
@@ -2738,7 +2828,7 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 </celldesigner:linkTarget>
 <celldesigner:line width="3.0" color="ff000000"/>
 </celldesigner:modification>
-<celldesigner:modification type="INHIBITION" modifiers="s116" aliases="sa29" targetLineIndex="-1,7" editPoints="0.0025603618302028064,0.020742578188163163 0.9875528009624692,-0.1008400438617616">
+<celldesigner:modification type="INHIBITION" modifiers="s116" aliases="sa29" targetLineIndex="-1,7" editPoints="0.0025603618302028064,0.020742578188163385 0.9875528009624693,-0.10084004386176137">
 <celldesigner:connectScheme connectPolicy="square">
 <celldesigner:listOfLineDirection>
 <celldesigner:lineDirection index="0" value="vertical"/>
@@ -2927,7 +3017,7 @@ MESH Id is provided for the phenotype &apos;Apoptosis&apos;.
 </celldesigner:linkTarget>
 <celldesigner:line width="3.0" color="ff000000"/>
 </celldesigner:modification>
-<celldesigner:modification type="INHIBITION" modifiers="s156" aliases="csa11" targetLineIndex="-1,2" editPoints="0.07210651322633788,0.0028511662646293345 0.0736675660903392,-0.03662814449375329">
+<celldesigner:modification type="INHIBITION" modifiers="s156" aliases="csa11" targetLineIndex="-1,2" editPoints="0.07210651322633832,0.0028511662646293345 0.07366756609033964,-0.03662814449375329">
 <celldesigner:connectScheme connectPolicy="square">
 <celldesigner:listOfLineDirection>
 <celldesigner:lineDirection index="0" value="vertical"/>

--- a/Curation/Coagulation pathway/Coagulation-pathway_stable.xml
+++ b/Curation/Coagulation pathway/Coagulation-pathway_stable.xml
--- a/Curation/ETC/ETC_stable.xml
+++ b/Curation/ETC/ETC_stable.xml
@@ -1022,23 +1022,6 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s209" name="Fe-S">
-<celldesigner:notes>
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<title/>
-</head>
-<body/>
-</html>
-</celldesigner:notes>
-<celldesigner:annotation>
-<celldesigner:complexSpecies>s210</celldesigner:complexSpecies>
-<celldesigner:speciesIdentity>
-<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
-<celldesigner:name>Fe-S</celldesigner:name>
-</celldesigner:speciesIdentity>
-</celldesigner:annotation>
-</celldesigner:species>
 <celldesigner:species id="s206" name="SDHA">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
@@ -1163,23 +1146,6 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s255" name="BCS1">
-<celldesigner:notes>
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<title/>
-</head>
-<body/>
-</html>
-</celldesigner:notes>
-<celldesigner:annotation>
-<celldesigner:complexSpecies>s267</celldesigner:complexSpecies>
-<celldesigner:speciesIdentity>
-<celldesigner:class>PROTEIN</celldesigner:class>
-<celldesigner:proteinReference>pr107</celldesigner:proteinReference>
-</celldesigner:speciesIdentity>
-</celldesigner:annotation>
-</celldesigner:species>
 <celldesigner:species id="s256" name="UQCR10">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
@@ -1758,7 +1724,7 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s357" name="ATPIF1">
+<celldesigner:species id="s357" name="ATP5IF1">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -2251,7 +2217,7 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s459" name="GARS">
+<celldesigner:species id="s459" name="GARS1">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -2268,7 +2234,7 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s460" name="KARS">
+<celldesigner:species id="s460" name="KARS1">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -2353,7 +2319,7 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s467" name="MTRNR1">
+<celldesigner:species id="s467" name="MT-RNR1">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -2693,23 +2659,6 @@ Uniprot O14561
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s490" name="POLG1">
-<celldesigner:notes>
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<title/>
-</head>
-<body/>
-</html>
-</celldesigner:notes>
-<celldesigner:annotation>
-<celldesigner:complexSpecies>s1111</celldesigner:complexSpecies>
-<celldesigner:speciesIdentity>
-<celldesigner:class>PROTEIN</celldesigner:class>
-<celldesigner:proteinReference>pr241</celldesigner:proteinReference>
-</celldesigner:speciesIdentity>
-</celldesigner:annotation>
-</celldesigner:species>
 <celldesigner:species id="s491" name="POLG2">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
@@ -3105,23 +3054,6 @@ Uniprot 	P49821
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s536" name="Fe-S">
-<celldesigner:notes>
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<title/>
-</head>
-<body/>
-</html>
-</celldesigner:notes>
-<celldesigner:annotation>
-<celldesigner:complexSpecies>s263</celldesigner:complexSpecies>
-<celldesigner:speciesIdentity>
-<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
-<celldesigner:name>Fe-S</celldesigner:name>
-</celldesigner:speciesIdentity>
-</celldesigner:annotation>
-</celldesigner:species>
 <celldesigner:species id="s537" name="FAD">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
@@ -3241,23 +3173,6 @@ Uniprot 	P49821
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s674" name="Fe-S">
-<celldesigner:notes>
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<title/>
-</head>
-<body/>
-</html>
-</celldesigner:notes>
-<celldesigner:annotation>
-<celldesigner:complexSpecies>s667</celldesigner:complexSpecies>
-<celldesigner:speciesIdentity>
-<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
-<celldesigner:name>Fe-S</celldesigner:name>
-</celldesigner:speciesIdentity>
-</celldesigner:annotation>
-</celldesigner:species>
 <celldesigner:species id="s675" name="FAD">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
@@ -3438,23 +3353,6 @@ Uniprot 	P49821
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s686" name="Fe-S">
-<celldesigner:notes>
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<title/>
-</head>
-<body/>
-</html>
-</celldesigner:notes>
-<celldesigner:annotation>
-<celldesigner:complexSpecies>s684</celldesigner:complexSpecies>
-<celldesigner:speciesIdentity>
-<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
-<celldesigner:name>Fe-S</celldesigner:name>
-</celldesigner:speciesIdentity>
-</celldesigner:annotation>
-</celldesigner:species>
 <celldesigner:species id="s425" name="H+">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
@@ -4588,7 +4486,7 @@ Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathw
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s1156" name="TIMM54">
+<celldesigner:species id="s1156" name="TIMM23">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -4598,14 +4496,14 @@ Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathw
 </html>
 </celldesigner:notes>
 <celldesigner:annotation>
-<celldesigner:complexSpecies>s1153</celldesigner:complexSpecies>
+<celldesigner:complexSpecies>s1154</celldesigner:complexSpecies>
 <celldesigner:speciesIdentity>
 <celldesigner:class>PROTEIN</celldesigner:class>
 <celldesigner:proteinReference>pr265</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s1157" name="TIMM18">
+<celldesigner:species id="s1157" name="TIMM17A">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -4615,14 +4513,14 @@ Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathw
 </html>
 </celldesigner:notes>
 <celldesigner:annotation>
-<celldesigner:complexSpecies>s1153</celldesigner:complexSpecies>
+<celldesigner:complexSpecies>s1154</celldesigner:complexSpecies>
 <celldesigner:speciesIdentity>
 <celldesigner:class>PROTEIN</celldesigner:class>
 <celldesigner:proteinReference>pr266</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
 </celldesigner:species>
-<celldesigner:species id="s1158" name="SDH3">
+<celldesigner:species id="s1173" name="TOMM37">
 <celldesigner:notes>
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
@@ -4632,14 +4530,14 @@ Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathw
 </html>
 </celldesigner:notes>
 <celldesigner:annotation>
-<celldesigner:complexSpecies>s1153</celldesigner:complexSpecies>
+<celldesigner:complexSpecies>s1174</celldesigner:complexSpecies>
 <celldesigner:speciesIdentity>
 <celldesigner:class>PROTEIN</celldesigner:class>
-<celldesigner:proteinReference>pr267</celldesigner:proteinReference>
+<celldesigner:proteinReference>pr278</celldesigner:proteinReference>
 </celldesigner:speciesIdentity>
 </celldesigner:annotation>
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-<celldesigner:species id="s1159" name="TIM17">
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