Commit 9c8739a2 authored by Marek Ostaszewski's avatar Marek Ostaszewski
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Update Readme.md, Analysis/EUvsVirus/Covid19KG_Fraunhofer_Hipathia/.gitkeep,...

Update Readme.md, Analysis/EUvsVirus/Covid19KG_Fraunhofer_Hipathia/.gitkeep, Analysis/EUvsVirus/GMLs_AF__four_maps/.gitkeep, Analysis/EUvsVirus/GMLs_AF__four_maps/Apoptosis.gml, Analysis/EUvsVirus/GMLs_AF__four_maps/Apoptosis_AF.pdf, Analysis/EUvsVirus/GMLs_AF__four_maps/ER-stress.gml, Analysis/EUvsVirus/GMLs_AF__four_maps/ER-stress_AF.pdf, Analysis/EUvsVirus/GMLs_AF__four_maps/Interferon.gml, Analysis/EUvsVirus/GMLs_AF__four_maps/Interferon_AF.pdf, Analysis/EUvsVirus/GMLs_AF__four_maps/PAMP.graphml, Analysis/EUvsVirus/GMLs_AF__four_maps/PAMP_AF.pdf, Analysis/EUvsVirus/Hipathia_maps/.gitkeep, Analysis/EUvsVirus/Hipathia_operableMaps/.gitkeep, Analysis/EUvsVirus/Hipathia_operableMaps/hsaCovid19KG.att, Analysis/EUvsVirus/Hipathia_operableMaps/hsaCovid19KG.sif, Analysis/EUvsVirus/MINERVA-API/drug_targets/ACE2-Spike-drugs.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/Apoptosis.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/ER stress.txt, Analysis/EUvsVirus/MINERVA-API/drug_targets/HCoVs ER stress (WP4869)...
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# Contents of the 'Analysis' folder
- **EUvsVirus** folder contains our code, data and models developed during the EUvsVirus hackathon
...@@ -2,10 +2,11 @@ ...@@ -2,10 +2,11 @@
This repository is to share models and code for the analysis of COVID-19/SARS-CoV-2 mechanisms. This repository is to share models and code for the analysis of COVID-19/SARS-CoV-2 mechanisms.
- **Analysis** folder is dedicated to analytical workflows for the content of the map
- **Curation** folder contains models curated in CellDesigner, Newt and SBGN-ED - **Curation** folder contains models curated in CellDesigner, Newt and SBGN-ED
- **Integration** folder contains the workflow for building a single map from multiple modules
- **EUvsVirus** folder contains our code, data and models developed during the EUvsVirus hackathon
- **Executable models** folder contains Boolean models of COVID-19 curated diagrams generated with CaSQ - **Executable models** folder contains Boolean models of COVID-19 curated diagrams generated with CaSQ
- **Integration** folder contains the workflow for building a single map from multiple modules
- **Resources** folder contains scripts demonstrating integration of COVID-19 Disease Map diagrams with other bioinformatic resources
- **WikiPathways** folder contains a list of key COVID19 pathways on the [WikiPathways platform](https://wikipathways.org), - **WikiPathways** folder contains a list of key COVID19 pathways on the [WikiPathways platform](https://wikipathways.org),
a dedicated collection [here](https://www.wikipathways.org/index.php/Portal:Disease/COVIDPathways). a dedicated collection [here](https://www.wikipathways.org/index.php/Portal:Disease/COVIDPathways).
Also, the folder contains examples of conversion of WikiPathways GPML to CellDesigner Also, the folder contains examples of conversion of WikiPathways GPML to CellDesigner
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