Commit 832cbc02 authored by Benjamin M. Gyori's avatar Benjamin M. Gyori
Browse files

Add Gilda groundings

parent 2b979813
Pipeline #46810 passed with stages
in 41 seconds
......@@ -4585,6 +4585,14 @@ RefSeq_ID: NM_001323552
<celldesigner:catalyzed reaction="re7"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:go:GO:0043293"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s_id_sa41" id="s_id_sa41" name="Apoptosis" compartment="s_id_ca5" initialAmount="0">
......@@ -7196,4 +7204,4 @@ RefSeq_ID: NM_004346
</reaction>
</listOfReactions>
</model>
</sbml>
</sbml>
\ No newline at end of file
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......@@ -130,6 +130,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:7797"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s827" name="p65">
<celldesigner:notes>
......@@ -321,6 +331,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
<celldesigner:proteinReference>pr93</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:HSP90"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s60" name="HSP90AB1">
<celldesigner:notes>
......@@ -3910,6 +3930,14 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:extension>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:7797"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s825" id="s825" name="NF-KB COMPLEX:IKBA" compartment="c2" initialAmount="0" charge="0">
......@@ -7536,4 +7564,4 @@ https://identifiers.org/reactome:R-HSA-844612.2
</reaction>
</listOfReactions>
</model>
</sbml>
</sbml>
\ No newline at end of file
......@@ -44,6 +44,16 @@ alias:JNK1 alias:SAPK1 HGNC:6881 RefSeq:NM_001278547 Ensembl:ENSG00000107643 Uni
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6881"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s2" name="MAPK9">
<celldesigner:notes>
......@@ -68,6 +78,16 @@ alias:JNK2 alias:SAPK HGNC:6886 RefSeq:NM_001135044 Ensembl:ENSG00000050748 Unip
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6886"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s3" name="MAPK10">
<celldesigner:notes>
......@@ -92,6 +112,16 @@ alias:JNK3 alias:p54bSAPK HGNC:6872 RefSeq:NM_001318067 Ensembl:ENSG00000109339
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6872"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s13" name="MAP3K4">
<celldesigner:notes>
......@@ -116,6 +146,16 @@ alias:MEKK4 HGNC:6856 RefSeq:NM_001291958 Ensembl:ENSG00000085511 Uniprot:Q9Y6R4
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6856"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s12" name="MAP3K1">
<celldesigner:notes>
......@@ -140,6 +180,16 @@ alias:MEKK1 HGNC:6848 RefSeq:NM_005921 Ensembl:ENSG00000095015 Uniprot:Q13233 En
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6848"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s50" name="MAP3K9">
<celldesigner:notes>
......@@ -164,6 +214,16 @@ alias:MLK1 alias:MEKK9 HGNC:6861 RefSeq:NM_001284230 Ensembl:ENSG00000006432 Uni
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6861"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s51" name="MAP3K10">
<celldesigner:notes>
......@@ -188,6 +248,16 @@ alias:MLK2 alias:MEKK10 HGNC:6849 RefSeq:NM_002446 Ensembl:ENSG00000130758 Unipr
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6849"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s52" name="MAP3K11">
<celldesigner:notes>
......@@ -212,6 +282,16 @@ alias:MLK3 alias:MEKK11 HGNC:6850 RefSeq:NM_002419 Ensembl:ENSG00000173327 Unipr
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6850"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s56" name="MAP3K9">
<celldesigner:notes>
......@@ -231,6 +311,16 @@ alias:MLK1 alias:MEKK9 HGNC:6861 RefSeq:NM_001284230 Ensembl:ENSG00000006432 Uni
<celldesigner:proteinReference>pr6</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6861"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s57" name="MAP3K10">
<celldesigner:notes>
......@@ -250,6 +340,16 @@ alias:MLK2 alias:MEKK10 HGNC:6849 RefSeq:NM_002446 Ensembl:ENSG00000130758 Unipr
<celldesigner:proteinReference>pr7</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6849"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s58" name="MAP3K11">
<celldesigner:notes>
......@@ -269,6 +369,16 @@ alias:MLK3 alias:MEKK11 HGNC:6850 RefSeq:NM_002419 Ensembl:ENSG00000173327 Unipr
<celldesigner:proteinReference>pr8</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6850"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s88" name="JUN">
<celldesigner:notes>
......@@ -293,6 +403,16 @@ alias:c-Jun alias:AP-1 HGNC:6204 RefSeq:NM_002228 Ensembl:ENSG00000177606 Unipro
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:JUN_family"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s89" name="JUND">
<celldesigner:notes>
......@@ -317,6 +437,16 @@ alias:AP-1 HGNC:6206 RefSeq:NM_005354 Ensembl:ENSG00000130522 Uniprot:P17535 Ent
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6206"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s92" name="JUN">
<celldesigner:notes>
......@@ -341,6 +471,16 @@ alias:c-Jun alias:AP-1 HGNC:6204 RefSeq:NM_002228 Ensembl:ENSG00000177606 Unipro
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:JUN_family"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s93" name="JUND">
<celldesigner:notes>
......@@ -365,6 +505,16 @@ alias:AP-1 HGNC:6206 RefSeq:NM_005354 Ensembl:ENSG00000130522 Uniprot:P17535 Ent
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6206"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s97" name="MAP3K1">
<celldesigner:notes>
......@@ -387,6 +537,16 @@ alias:AP-1 HGNC:6206 RefSeq:NM_005354 Ensembl:ENSG00000130522 Uniprot:P17535 Ent
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6848"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s98" name="MAP3K4">
<celldesigner:notes>
......@@ -409,6 +569,16 @@ alias:AP-1 HGNC:6206 RefSeq:NM_005354 Ensembl:ENSG00000130522 Uniprot:P17535 Ent
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6856"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s110" name="MAPK8">
<celldesigner:notes>
......@@ -426,6 +596,16 @@ alias:AP-1 HGNC:6206 RefSeq:NM_005354 Ensembl:ENSG00000130522 Uniprot:P17535 Ent
<celldesigner:proteinReference>pr1</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6881"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s108" name="MAPK9">
<celldesigner:notes>
......@@ -445,6 +625,16 @@ alias:JNK2 alias:SAPK HGNC:6886 RefSeq:NM_001135044 Ensembl:ENSG00000050748 Unip
<celldesigner:proteinReference>pr2</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6886"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s109" name="MAPK10">
<celldesigner:notes>
......@@ -464,6 +654,16 @@ alias:JNK3 alias:p54bSAPK HGNC:6872 RefSeq:NM_001318067 Ensembl:ENSG00000109339
<celldesigner:proteinReference>pr3</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6872"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s42" name="S">
<celldesigner:notes>
......@@ -2208,6 +2408,14 @@ Uniprot:P0QGFD
<celldesigner:catalyzed reaction="re36"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:JNK"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s87" id="s87" name="AP-1" compartment="c3" initialAmount="0">
......@@ -2220,6 +2428,14 @@ Uniprot:P0QGFD
<celldesigner:name>AP-1</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:AP1"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s90" id="s90" name="AP-1" compartment="c3" initialAmount="0">
......@@ -2232,6 +2448,14 @@ Uniprot:P0QGFD
<celldesigner:name>AP-1</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:AP1"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s94" id="s94" name="MEKK1/4" compartment="c5" initialAmount="0">
......@@ -2346,6 +2570,14 @@ Uniprot:P0QGFD
<celldesigner:name>JNK</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:fplx:JNK"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s105" id="s105" name="3a" compartment="c2" initialAmount="0">
......@@ -3599,4 +3831,4 @@ Uniprot:P0QGFD
</reaction>
</listOfReactions>
</model>
</sbml>
</sbml>
\ No newline at end of file
......@@ -39,6 +39,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
<celldesigner:proteinReference>pr62</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:1564"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s484" name="AHR">
<celldesigner:notes>
......@@ -141,6 +151,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
<celldesigner:proteinReference>pr77</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:29831"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s594" name="Zn2+">
<celldesigner:notes>
......@@ -175,6 +195,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
<celldesigner:proteinReference>pr78</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:20989"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s596" name="Mg2+">
<celldesigner:notes>
......@@ -209,6 +239,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
<celldesigner:proteinReference>pr78</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:20989"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s599" name="Zn2+">
<celldesigner:notes>
......@@ -243,6 +283,16 @@ Ebru Kocakaya, Ankara University, Ankara, Turkey
<celldesigner:proteinReference>pr80</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:16789"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s601" name="Mg2+">
<celldesigner:notes>
......@@ -279,6 +329,16 @@ nitrated IDO1 is inactive
<celldesigner:proteinReference>pr52</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:6059"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s628" name="Heme">
<celldesigner:notes>
......@@ -296,6 +356,16 @@ nitrated IDO1 is inactive
<celldesigner:name>Heme</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D006418"/></rdf:Bag>
</bqbiol:is>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s640" name="NT5E">
<celldesigner:notes>
......@@ -313,6 +383,16 @@ nitrated IDO1 is inactive
<celldesigner:proteinReference>pr88</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
<sbml:annotation>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:8021"/></rdf:Bag>
</bqbiol:isEncodedBy>
</rdf:Description>
</rdf:RDF>
</sbml:annotation>
</celldesigner:species>
<celldesigner:species id="s641" name="Zn2+">
<celldesigner:notes>
......@@ -347,6 +427,16 @@ nitrated IDO1 is inactive