Commit 7d466228 authored by Marek Ostaszewski's avatar Marek Ostaszewski
Browse files

integration up

parent b5169fd1
......@@ -9,9 +9,6 @@ options(stringsAsFactors = F)
library(httr)
library(xml2)
library(here)
setwd(paste0(here(),"/Integration/MINERVA_build/"))
### An 'xml2' namespace structure for parsing CellDesigner xml
ns_cd <- xml_ns_rename(xml_ns(read_xml("<root>
......@@ -154,7 +151,7 @@ if(reconstruct_mapping) {
### and remove unnecessary reactions
### Load the template, readlines
con <- url("https://git-r3lab.uni.lu/covid/models/-/raw/master/Integration/template_mapping.xml")
con <- url("https://git-r3lab.uni.lu/covid/models/-/raw/master/Integration/MINERVA_build/template_mapping.xml")
mapping <- paste(readLines(con), collapse = "\n")
close(con)
......
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