Commit 58979cb3 authored by Marek Ostaszewski's avatar Marek Ostaszewski
Browse files

Merge branch 'repo_update' into 'master'

HMOX1 example added

See merge request !261
parents cfaa54e9 ac052dd3
...@@ -21,11 +21,20 @@ ask_GET <- function(fask_url, verbose = F) { ...@@ -21,11 +21,20 @@ ask_GET <- function(fask_url, verbose = F) {
return(NULL) return(NULL)
} }
### Example 1
ER_sif_raw <- "https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
### Define the source diagram name ### Define the source diagram name
diag_name <- "Endoplasmatic Reticulum stress" diag_name <- "Endoplasmatic Reticulum stress"
### Read in the raw SIF version (here straight from the github of Aurelien) ### Example 2
raw_sif <- read.table(url("https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"), HMOX_sif_raw <- "https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif"
### Define the source diagram name
diag_name <- "HMOX1 pathway"
### Read in the raw SIF version (here straight from the gitlab repo)
raw_sif <- read.table(url(HMOX_sif_raw),
sep = " ", header = F, stringsAsFactors = F) sep = " ", header = F, stringsAsFactors = F)
### Get MINERVA elements ### Get MINERVA elements
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment