Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Menu
Open sidebar
COVID-19
models
Commits
58979cb3
Commit
58979cb3
authored
Jan 19, 2021
by
Marek Ostaszewski
Browse files
Merge branch 'repo_update' into 'master'
HMOX1 example added See merge request
!261
parents
cfaa54e9
ac052dd3
Changes
1
Hide whitespace changes
Inline
Side-by-side
Resources/Hipathia/resolve_aliases.R
View file @
58979cb3
...
...
@@ -21,11 +21,20 @@ ask_GET <- function(fask_url, verbose = F) {
return
(
NULL
)
}
### Example 1
ER_sif_raw
<-
"https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
### Define the source diagram name
diag_name
<-
"Endoplasmatic Reticulum stress"
### Read in the raw SIF version (here straight from the github of Aurelien)
raw_sif
<-
read.table
(
url
(
"https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
),
### Example 2
HMOX_sif_raw
<-
"https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif"
### Define the source diagram name
diag_name
<-
"HMOX1 pathway"
### Read in the raw SIF version (here straight from the gitlab repo)
raw_sif
<-
read.table
(
url
(
HMOX_sif_raw
),
sep
=
" "
,
header
=
F
,
stringsAsFactors
=
F
)
### Get MINERVA elements
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment