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Commit 48692107 authored by Marek Ostaszewski's avatar Marek Ostaszewski
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Merge branch 'repo_update' of ssh://git-r3lab-server.uni.lu:8022/covid/models into repo_update

parents 8b0ef50c d8a86220
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Executable Modules/SBML_qual_build/sbml/JNK_pathway_stable.sbml
View file @ 48692107
...@@ -105,7 +105,43 @@ ...@@ -105,7 +105,43 @@
</bqbiol:isEncodedBy> </bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TP53_phosphorylated" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s40" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description> <bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TP53_phosphorylated" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s40" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF> </rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="3b" qual:constant="true" qual:id="sa75"><annotation><rdf:RDF><rdf:Description rdf:about="#s103"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:3b" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s103" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="7a" qual:constant="true" qual:id="sa76"><annotation><rdf:RDF><rdf:Description rdf:about="#s104"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:7a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s104" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="3a" qual:constant="true" qual:id="sa77"><annotation><rdf:RDF><rdf:Description rdf:about="#s105"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:3a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s105" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="S" qual:constant="true" qual:id="sa78"><annotation><rdf:RDF><rdf:Description rdf:about="#s106"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:S" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s106" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies></qual:listOfQualitativeSpecies><qual:listOfTransitions><qual:transition qual:id="tr_csa1"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa12" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_0" /><qual:input qual:qualitativeSpecies="sa4" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_1" /><qual:input qual:qualitativeSpecies="sa5" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_2" /><qual:input qual:qualitativeSpecies="sa76" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_3" /><qual:input qual:qualitativeSpecies="sa77" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_4" /><qual:input qual:qualitativeSpecies="sa78" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_5" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa1" qual:transitionEffect="assignmentLevel" qual:id="tr_csa1_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><or /><apply><and /><apply><or /><apply><eq /><ci>sa4</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa5</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa76</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa77</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>csa12</ci><cn type="integer">1</cn></apply></apply><apply><and /><apply><eq /><ci>csa12</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa78</ci><cn type="integer">1</cn></apply></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title /></head><body><p>Vero E6 cell </annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="3b" qual:constant="true" qual:id="sa75"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s103">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59633" />
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:3b" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s103" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="7a" qual:constant="true" qual:id="sa76"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s104">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59635" />
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:7a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s104" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="3a" qual:constant="true" qual:id="sa77"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s105">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59632" />
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:3a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s105" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="S" qual:constant="true" qual:id="sa78"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s106">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59594" />
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:S" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s106" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies></qual:listOfQualitativeSpecies><qual:listOfTransitions><qual:transition qual:id="tr_csa1"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa12" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_0" /><qual:input qual:qualitativeSpecies="sa4" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_1" /><qual:input qual:qualitativeSpecies="sa5" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_2" /><qual:input qual:qualitativeSpecies="sa76" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_3" /><qual:input qual:qualitativeSpecies="sa77" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_4" /><qual:input qual:qualitativeSpecies="sa78" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_5" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa1" qual:transitionEffect="assignmentLevel" qual:id="tr_csa1_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><or /><apply><and /><apply><or /><apply><eq /><ci>sa4</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa5</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa76</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa77</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>csa12</ci><cn type="integer">1</cn></apply></apply><apply><and /><apply><eq /><ci>csa12</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa78</ci><cn type="integer">1</cn></apply></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title /></head><body><p>Vero E6 cell
</p> </p>
<p>Vero E6 cells <p>Vero E6 cells
</p> </p>
......
Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable.sif
View file @ 48692107
...@@ -160,11 +160,11 @@ cytokine_storm_phenotype POSITIVE IL1B ...@@ -160,11 +160,11 @@ cytokine_storm_phenotype POSITIVE IL1B
cytokine_storm_phenotype POSITIVE IL8 cytokine_storm_phenotype POSITIVE IL8
cytokine_storm_phenotype POSITIVE IL2RA cytokine_storm_phenotype POSITIVE IL2RA
IL1B POSITIVE Thrombosis_phenotype_Blood IL1B POSITIVE Thrombosis_phenotype_Blood
IL8 POSITIVE Thrombosis_phenotype_Blood
IL2RA POSITIVE Thrombosis_phenotype_Blood
CRP POSITIVE Thrombosis_phenotype_Blood
C4d POSITIVE Thrombosis_phenotype_Blood C4d POSITIVE Thrombosis_phenotype_Blood
C4d POSITIVE C4d_deposition_phenotype C4d POSITIVE C4d_deposition_phenotype
CRP POSITIVE Thrombosis_phenotype_Blood
IL2RA POSITIVE Thrombosis_phenotype_Blood
IL8 POSITIVE Thrombosis_phenotype_Blood
C3 POSITIVE C3a C3 POSITIVE C3a
C3 POSITIVE C3b C3 POSITIVE C3b
MASP1 POSITIVE C2a MASP1 POSITIVE C2a
...@@ -185,8 +185,8 @@ ACE2_Endothelium,_vascular POSITIVE angiotensin_I-7_simple_molecule ...@@ -185,8 +185,8 @@ ACE2_Endothelium,_vascular POSITIVE angiotensin_I-7_simple_molecule
Fibrin_monomer POSITIVE Fibrin_polymer Fibrin_monomer POSITIVE Fibrin_polymer
F13a POSITIVE Fibrin_polymer F13a POSITIVE Fibrin_polymer
platelet_activation_phenotype POSITIVE thrombus_formation_phenotype platelet_activation_phenotype POSITIVE thrombus_formation_phenotype
MAS1 NEGATIVE thrombus_formation_phenotype
AGTR1_Platelet POSITIVE thrombus_formation_phenotype AGTR1_Platelet POSITIVE thrombus_formation_phenotype
MAS1 POSITIVE thrombus_formation_phenotype
K+_ion POSITIVE aldosterone_simple_molecule_Blood K+_ion POSITIVE aldosterone_simple_molecule_Blood
ACTH_simple_molecule POSITIVE aldosterone_simple_molecule_Blood ACTH_simple_molecule POSITIVE aldosterone_simple_molecule_Blood
aldosterone_simple_molecule_Endothelium,_vascular POSITIVE NR3C2 aldosterone_simple_molecule_Endothelium,_vascular POSITIVE NR3C2
......
Executable Modules/SBML_qual_build/sif/Coagulation-pathway_stable_raw.sif
View file @ 48692107
...@@ -160,11 +160,11 @@ sa416 POSITIVE sa244 ...@@ -160,11 +160,11 @@ sa416 POSITIVE sa244
sa416 POSITIVE sa304 sa416 POSITIVE sa304
sa416 POSITIVE sa306 sa416 POSITIVE sa306
sa244 POSITIVE sa271 sa244 POSITIVE sa271
sa304 POSITIVE sa271
sa306 POSITIVE sa271
sa410 POSITIVE sa271
sa387 POSITIVE sa271 sa387 POSITIVE sa271
sa387 POSITIVE sa388 sa387 POSITIVE sa388
sa410 POSITIVE sa271
sa306 POSITIVE sa271
sa304 POSITIVE sa271
sa252 POSITIVE sa308 sa252 POSITIVE sa308
sa252 POSITIVE sa310 sa252 POSITIVE sa310
sa358 POSITIVE sa367 sa358 POSITIVE sa367
...@@ -185,8 +185,8 @@ sa394 POSITIVE sa400 ...@@ -185,8 +185,8 @@ sa394 POSITIVE sa400
sa395 POSITIVE sa424 sa395 POSITIVE sa424
sa425 POSITIVE sa424 sa425 POSITIVE sa424
sa430 POSITIVE sa441 sa430 POSITIVE sa441
sa483 NEGATIVE sa441
sa484 POSITIVE sa441 sa484 POSITIVE sa441
sa483 POSITIVE sa441
sa521 POSITIVE sa503 sa521 POSITIVE sa503
sa527 POSITIVE sa503 sa527 POSITIVE sa503
sa509 POSITIVE sa516 sa509 POSITIVE sa516
......
Executable Modules/SBML_qual_build/sif/ETC_stable.sif
View file @ 48692107
...@@ -63,8 +63,8 @@ TRMT1 POSITIVE MT_tRNAs_complex ...@@ -63,8 +63,8 @@ TRMT1 POSITIVE MT_tRNAs_complex
Nsp8 NEGATIVE Nsp8-affected_Mt_ribosomal_proteins_complex Nsp8 NEGATIVE Nsp8-affected_Mt_ribosomal_proteins_complex
TIM22_complex_complex POSITIVE precursor_protein_N-terminus_binding TIM22_complex_complex POSITIVE precursor_protein_N-terminus_binding
TIMM29 POSITIVE TIM22_complex_complex TIMM29 POSITIVE TIM22_complex_complex
NSP4 NEGATIVE TIM22_complex_complex Nsp4 NEGATIVE TIM22_complex_complex
NSP4 NEGATIVE TIM9-TIM10_complex_complex Nsp4 NEGATIVE TIM9-TIM10_complex_complex
TIM9-TIM10_complex_complex POSITIVE precursor_protein_N-terminus_binding TIM9-TIM10_complex_complex POSITIVE precursor_protein_N-terminus_binding
Cyt_C_mitochondrial_matrix POSITIVE Q_simple_molecule_mitochondrial_matrix Cyt_C_mitochondrial_matrix POSITIVE Q_simple_molecule_mitochondrial_matrix
Cyt_C_mitochondrial_matrix POSITIVE H+_ion_Intermembrane_space Cyt_C_mitochondrial_matrix POSITIVE H+_ion_Intermembrane_space
...@@ -151,5 +151,5 @@ Orf9c NEGATIVE ECSIT ...@@ -151,5 +151,5 @@ Orf9c NEGATIVE ECSIT
Orf9c NEGATIVE ACAD9 Orf9c NEGATIVE ACAD9
Nsp7 NEGATIVE NDUFAF7 Nsp7 NEGATIVE NDUFAF7
TOM_complex_complex POSITIVE precursor_protein_N-terminus_binding TOM_complex_complex POSITIVE precursor_protein_N-terminus_binding
ORF9b NEGATIVE precursor_protein_N-terminus_binding Orf9b NEGATIVE precursor_protein_N-terminus_binding
TIM23_complex_complex POSITIVE precursor_protein_N-terminus_binding TIM23_complex_complex POSITIVE precursor_protein_N-terminus_binding
Executable Modules/SBML_qual_build/sif/E_protein_stable.sif
View file @ 48692107
...@@ -16,15 +16,15 @@ H4C9 POSITIVE histone_complex_Nucleus ...@@ -16,15 +16,15 @@ H4C9 POSITIVE histone_complex_Nucleus
H2BC21 POSITIVE histone_complex_Nucleus H2BC21 POSITIVE histone_complex_Nucleus
H2A POSITIVE histone_complex_Nucleus H2A POSITIVE histone_complex_Nucleus
CRB3:PALS1:PATJ_complex_complex POSITIVE Maintenance_of_tight_junction_phenotype CRB3:PALS1:PATJ_complex_complex POSITIVE Maintenance_of_tight_junction_phenotype
PALS1 POSITIVE CRB3:PALS1:PATJ_complex_complex MPP5 POSITIVE CRB3:PALS1:PATJ_complex_complex
PALS1 POSITIVE E-PALS1_complex MPP5 POSITIVE E-PALS1_complex
PALS1 POSITIVE PALS1 MPP5 POSITIVE MPP5
CRB3 POSITIVE CRB3:PALS1:PATJ_complex_complex CRB3 POSITIVE CRB3:PALS1:PATJ_complex_complex
CRB3 POSITIVE CRB3 CRB3 POSITIVE CRB3
PATJ POSITIVE CRB3:PALS1:PATJ_complex_complex PATJ POSITIVE CRB3:PALS1:PATJ_complex_complex
PATJ POSITIVE PATJ PATJ POSITIVE PATJ
ASIC1_trimer:H+:STOML3_complex POSITIVE Activity_of_sodium_channels_phenotype ASIC1_trimer:H+:STOML3_complex POSITIVE Activity_of_sodium_channels_phenotype
ASIC1_trimer POSITIVE ASIC1_trimer:H+:STOML3_complex ASIC1 POSITIVE ASIC1_trimer:H+:STOML3_complex
STOML3 POSITIVE ASIC1_trimer:H+:STOML3_complex STOML3 POSITIVE ASIC1_trimer:H+:STOML3_complex
STOML3 NEGATIVE Activity_of_sodium_channels_phenotype STOML3 NEGATIVE Activity_of_sodium_channels_phenotype
E_Cytoplasm NEGATIVE ASIC1_trimer:H+:STOML3_complex E_Cytoplasm NEGATIVE ASIC1_trimer:H+:STOML3_complex
...@@ -40,5 +40,5 @@ CCNT1 POSITIVE P-TEFb_complex ...@@ -40,5 +40,5 @@ CCNT1 POSITIVE P-TEFb_complex
E_Nucleus NEGATIVE BRD4 E_Nucleus NEGATIVE BRD4
E_Nucleus NEGATIVE BRD2 E_Nucleus NEGATIVE BRD2
TBP POSITIVE TBP TBP POSITIVE TBP
JQ1 NEGATIVE BRD2 JQ-1_simple_molecule NEGATIVE BRD2
H+_ion POSITIVE ASIC1_trimer H+_ion POSITIVE ASIC1
Executable Modules/SBML_qual_build/sif/E_protein_stable_raw.sif
View file @ 48692107
...@@ -28,11 +28,11 @@ sa25 POSITIVE csa4 ...@@ -28,11 +28,11 @@ sa25 POSITIVE csa4
sa24 POSITIVE csa4 sa24 POSITIVE csa4
sa24 NEGATIVE sa73 sa24 NEGATIVE sa73
sa22 NEGATIVE csa4 sa22 NEGATIVE csa4
sa22 NEGATIVE csa5 sa22 NEGATIVE csa10
sa22 POSITIVE csa3 sa22 POSITIVE csa3
csa5 POSITIVE sa66 csa10 POSITIVE sa66
csa5 POSITIVE sa67 csa10 POSITIVE sa67
csa5 POSITIVE sa73 csa10 POSITIVE sa73
csa3 POSITIVE sa74 csa3 POSITIVE sa74
csa8 POSITIVE sa77 csa8 POSITIVE sa77
sa10 POSITIVE csa8 sa10 POSITIVE csa8
...@@ -40,5 +40,5 @@ sa11 POSITIVE csa8 ...@@ -40,5 +40,5 @@ sa11 POSITIVE csa8
sa13 NEGATIVE sa12 sa13 NEGATIVE sa12
sa13 NEGATIVE sa20 sa13 NEGATIVE sa20
sa17 POSITIVE sa17 sa17 POSITIVE sa17
sa4 NEGATIVE sa20 sa79 NEGATIVE sa20
sa26 POSITIVE sa25 sa26 POSITIVE sa25
Executable Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif
View file @ 48692107
...@@ -20,25 +20,10 @@ sa78 POSITIVE csa8 ...@@ -20,25 +20,10 @@ sa78 POSITIVE csa8
sa126 NEGATIVE csa8 sa126 NEGATIVE csa8
csa10 POSITIVE csa32 csa10 POSITIVE csa32
csa10 POSITIVE sa249 csa10 POSITIVE sa249
csa78 POSITIVE csa81
csa78 POSITIVE csa94
csa78 POSITIVE sa382
csa78 POSITIVE sa385
csa81 POSITIVE csa78
sa376 POSITIVE csa78
sa376 POSITIVE csa90
csa12 POSITIVE sa135 csa12 POSITIVE sa135
csa12 POSITIVE sa138 csa12 POSITIVE sa138
csa12 POSITIVE sa158 csa12 POSITIVE sa158
sa140 POSITIVE csa12 sa140 POSITIVE csa12
csa80 POSITIVE csa81
sa375 POSITIVE csa81
sa375 POSITIVE csa87
sa375 POSITIVE csa88
sa381 POSITIVE csa81
sa381 POSITIVE csa94
sa381 POSITIVE sa382
sa381 POSITIVE sa385
csa27 POSITIVE csa29 csa27 POSITIVE csa29
csa31 POSITIVE csa27 csa31 POSITIVE csa27
csa31 POSITIVE sa214 csa31 POSITIVE sa214
...@@ -48,42 +33,40 @@ sa214 POSITIVE csa27 ...@@ -48,42 +33,40 @@ sa214 POSITIVE csa27
csa29 POSITIVE csa30 csa29 POSITIVE csa30
csa29 POSITIVE sa229 csa29 POSITIVE sa229
csa30 POSITIVE csa31 csa30 POSITIVE csa31
csa79 POSITIVE csa80 csa74 POSITIVE sa468
csa72 POSITIVE csa72
csa72 POSITIVE csa79
sa495 POSITIVE csa72
sa495 POSITIVE csa79
sa494 POSITIVE csa72
sa494 POSITIVE csa79
sa362 POSITIVE csa72
sa362 POSITIVE csa74 sa362 POSITIVE csa74
csa74 POSITIVE csa72 sa362 POSITIVE sa468
sa471 POSITIVE csa72
sa469 POSITIVE csa72
sa165 POSITIVE csa72
sa165 POSITIVE sa130
sa165 POSITIVE sa366
sa363 POSITIVE csa69
sa363 POSITIVE csa74 sa363 POSITIVE csa74
sa364 POSITIVE csa69 sa363 POSITIVE csa69
sa364 POSITIVE sa366 csa72 POSITIVE csa72
csa72 POSITIVE sa362
sa367 POSITIVE csa72
csa21 POSITIVE sa27 csa21 POSITIVE sa27
csa21 POSITIVE sa32 csa21 POSITIVE sa32
sa150 POSITIVE csa21 sa150 POSITIVE csa21
csa69 POSITIVE sa363
csa69 POSITIVE sa366
sa364 POSITIVE csa69
sa364 POSITIVE sa366
csa85 POSITIVE csa83 csa85 POSITIVE csa83
csa85 POSITIVE csa88 csa85 POSITIVE csa88
sa377 POSITIVE csa83 sa377 POSITIVE csa83
csa89 POSITIVE csa87 sa375 POSITIVE csa88
csa86 POSITIVE csa89 sa375 POSITIVE csa78
csa87 POSITIVE csa90 csa78 POSITIVE csa78
sa378 POSITIVE csa86 csa78 POSITIVE csa94
sa379 POSITIVE csa86 csa78 POSITIVE sa382
csa78 POSITIVE sa385
sa468 POSITIVE csa78
sa381 POSITIVE csa78
sa381 POSITIVE csa94
sa381 POSITIVE sa382
sa381 POSITIVE sa385
csa11 POSITIVE sa152 csa11 POSITIVE sa152
sa144 POSITIVE csa11 sa144 POSITIVE csa11
sa145 POSITIVE csa11 sa145 POSITIVE csa11
sa32 POSITIVE csa3 sa32 POSITIVE csa3
sa39 POSITIVE csa3 sa39 POSITIVE csa3
sa39 POSITIVE sa39
csa93 POSITIVE sa460 csa93 POSITIVE sa460
csa93 POSITIVE sa461 csa93 POSITIVE sa461
csa93 POSITIVE sa464 csa93 POSITIVE sa464
...@@ -116,12 +99,11 @@ sa25 POSITIVE sa27 ...@@ -116,12 +99,11 @@ sa25 POSITIVE sa27
sa25 POSITIVE sa28 sa25 POSITIVE sa28
sa25 POSITIVE sa31 sa25 POSITIVE sa31
sa25 POSITIVE sa32 sa25 POSITIVE sa32
sa29 POSITIVE sa22 sa168 POSITIVE sa22
sa29 POSITIVE sa26 sa168 POSITIVE sa26
sa29 POSITIVE sa27 sa168 POSITIVE sa27
sa29 POSITIVE sa28 sa168 POSITIVE sa28
sa29 POSITIVE sa29 sa168 POSITIVE sa31
sa29 POSITIVE sa31
sa54 POSITIVE sa23 sa54 POSITIVE sa23
sa54 POSITIVE sa57 sa54 POSITIVE sa57
sa55 POSITIVE sa23 sa55 POSITIVE sa23
...@@ -153,8 +135,8 @@ sa135 POSITIVE sa158 ...@@ -153,8 +135,8 @@ sa135 POSITIVE sa158
sa164 POSITIVE sa28 sa164 POSITIVE sa28
sa238 POSITIVE sa28 sa238 POSITIVE sa28
sa241 POSITIVE sa28 sa241 POSITIVE sa28
sa29 POSITIVE sa168
sa50 POSITIVE sa29 sa50 POSITIVE sa29
sa169 POSITIVE sa29
sa31 NEGATIVE sa165 sa31 NEGATIVE sa165
sa151 POSITIVE sa36 sa151 POSITIVE sa36
sa171 POSITIVE sa39 sa171 POSITIVE sa39
...@@ -205,6 +187,10 @@ csa17 POSITIVE sa123 ...@@ -205,6 +187,10 @@ csa17 POSITIVE sa123
sa130 POSITIVE sa127 sa130 POSITIVE sa127
sa130 POSITIVE sa166 sa130 POSITIVE sa166
sa128 POSITIVE sa130 sa128 POSITIVE sa130
sa165 POSITIVE sa130
sa165 POSITIVE sa363
sa165 POSITIVE sa366
sa165 POSITIVE sa468
csa22 POSITIVE sa135 csa22 POSITIVE sa135
csa22 POSITIVE sa138 csa22 POSITIVE sa138
csa22 POSITIVE sa158 csa22 POSITIVE sa158
...@@ -215,7 +201,9 @@ sa156 POSITIVE sa158 ...@@ -215,7 +201,9 @@ sa156 POSITIVE sa158
sa157 POSITIVE sa138 sa157 POSITIVE sa138
sa157 POSITIVE sa158 sa157 POSITIVE sa158
sa167 POSITIVE sa166 sa167 POSITIVE sa166
sa169 POSITIVE sa168
sa190 POSITIVE sa3 sa190 POSITIVE sa3
sa526 POSITIVE sa3
sa196 POSITIVE sa197 sa196 POSITIVE sa197
sa203 POSITIVE sa197 sa203 POSITIVE sa197
sa203 POSITIVE sa204 sa203 POSITIVE sa204
...@@ -226,9 +214,6 @@ sa198 POSITIVE sa205 ...@@ -226,9 +214,6 @@ sa198 POSITIVE sa205
sa229 POSITIVE sa238 sa229 POSITIVE sa238
sa242 POSITIVE sa238 sa242 POSITIVE sa238
sa243 POSITIVE sa238 sa243 POSITIVE sa238
sa367 POSITIVE sa362
csa68 POSITIVE sa363
csa68 POSITIVE sa366
csa101 POSITIVE sa367 csa101 POSITIVE sa367
sa462 POSITIVE sa460 sa462 POSITIVE sa460
sa462 POSITIVE sa464 sa462 POSITIVE sa464
...@@ -236,3 +221,9 @@ sa463 POSITIVE sa461 ...@@ -236,3 +221,9 @@ sa463 POSITIVE sa461
sa463 POSITIVE sa465 sa463 POSITIVE sa465
sa464 POSITIVE sa466 sa464 POSITIVE sa466
sa465 POSITIVE sa467 sa465 POSITIVE sa467
sa471 POSITIVE sa468
sa528 POSITIVE sa468
sa527 POSITIVE sa468
sa469 POSITIVE sa468
sa494 POSITIVE sa468
sa495 POSITIVE sa468
Executable Modules/SBML_qual_build/sif/IFN-lambda_stable.sif
View file @ 48692107
...@@ -3,51 +3,51 @@ receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell ...@@ -3,51 +3,51 @@ receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
receptor_complex_complex_cell POSITIVE ISGF3_precursor_complex receptor_complex_complex_cell POSITIVE ISGF3_precursor_complex
receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
receptor_complex_complex_cell POSITIVE IFNL receptor_complex_complex_cell POSITIVE Ifn_lambda_complex
receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell receptor_complex_complex_cell POSITIVE receptor_complex_complex_cell
IFNL POSITIVE receptor_complex_complex_cell Ifn_lambda_complex POSITIVE receptor_complex_complex_cell
ISGF3_complex POSITIVE ISGs_rna ISGF3_complex POSITIVE ISGs_rna
ISGF3_precursor_complex POSITIVE ISGF3_complex ISGF3_precursor_complex POSITIVE ISGF3_complex
ISGF3_precursor_complex POSITIVE Inhibited_ISGF3_precursor?_complex ISGF3_precursor_complex POSITIVE Inhibited_ISGF3_precursor_complex
IRF9 POSITIVE ISGF3_complex IRF9 POSITIVE ISGF3_complex
SOCS3 POSITIVE receptor_complex_complex_cell SOCS3 POSITIVE receptor_complex_complex_cell
STAT3 POSITIVE Inhibited_ISGF3_precursor?_complex STAT3 POSITIVE Inhibited_ISGF3_precursor_complex
p38-NFkB-IRF3_complex POSITIVE IFN-III_rna p38-NFkB_complex POSITIVE IFN-III_rna
IRF3_phosphorylated POSITIVE p38-NFkB-IRF3_complex IRF3_phosphorylated POSITIVE p38-NFkB_complex
ribosomal_40S_subunit_complex POSITIVE inhibited_ribosomal_40S_SU_complex ribosomal_40S_subunit_complex POSITIVE inhibited_ribosomal_40S_SU_complex
ribosomal_40S_subunit_complex POSITIVE 80S_ribosome_complex ribosomal_40S_subunit_complex POSITIVE 80S_ribosome_complex
viral_nsp1 POSITIVE inhibited_ribosomal_40S_SU_complex Nsp1 POSITIVE inhibited_ribosomal_40S_SU_complex
viral_nsp1 POSITIVE inhibited_80S_ribosome_complex Nsp1 POSITIVE inhibited_80S_ribosome_complex
80S_ribosome_complex POSITIVE inhibited_80S_ribosome_complex 80S_ribosome_complex POSITIVE inhibited_80S_ribosome_complex
80S_ribosome_complex POSITIVE IFNs 80S_ribosome_complex POSITIVE IFNs_complex
80S_ribosome_complex POSITIVE antiviral_proteins 80S_ribosome_complex POSITIVE antiviral_proteins_complex
RIG-I-MAVS_complex_mitochondria POSITIVE IRF3_phosphorylated RIG-I-MAVS_complex_mitochondria POSITIVE IRF3_phosphorylated
RIG-I_ubiquitinated POSITIVE RIG-I-MAVS_complex_mitochondria RIG-I:dsRNA_complex_mitochondria POSITIVE RIG-I-MAVS_complex_mitochondria
RIG-I_ubiquitinated POSITIVE RIG-I RIG-I:dsRNA_complex_mitochondria POSITIVE RIG-I:dsRNA_complex_mitochondria
mitoMAVS POSITIVE RIG-I-MAVS_complex_mitochondria MAVS POSITIVE RIG-I-MAVS_complex_mitochondria
STAT1_empty POSITIVE ISGF3_precursor_complex STAT1_empty POSITIVE ISGF3_precursor_complex
STAT2_empty POSITIVE ISGF3_precursor_complex STAT2_empty POSITIVE ISGF3_precursor_complex
RIG-I-MAVS_complex_peroxisome POSITIVE IRF1_phosphorylated RIG-I-MAVS_complex_peroxisome POSITIVE IRF1_phosphorylated
dsRNA_rna_innate_immune_cell POSITIVE RIG-I-MAVS_complex_peroxisome dsRNA_rna POSITIVE RIG-I-MAVS_complex_peroxisome
dsRNA_rna_innate_immune_cell POSITIVE RIG-I dsRNA_rna POSITIVE RIG-I:dsRNA_complex_mitochondria
dsRNA_rna_innate_immune_cell POSITIVE dsRNA_vesicle_rna dsRNA_rna POSITIVE dsRNA_vesicle_rna
ribosomal_60S_subunit_complex POSITIVE 80S_ribosome_complex ribosomal_60S_subunit_complex POSITIVE 80S_ribosome_complex
SOCS1 POSITIVE receptor_complex_complex_cell M POSITIVE RIG-1_M-Protein_complex
M-protein,_membrane-bound POSITIVE RIG-1_M-Protein_complex
RIG-I POSITIVE RIG-1_M-Protein_complex RIG-I POSITIVE RIG-1_M-Protein_complex
RIG-I POSITIVE RIG-I RIG-I POSITIVE RIG-I:dsRNA_complex_mitochondria
RIG-I POSITIVE RIG-I_ubiquitinated RIG-I:dsRNA_complex_mitochondria POSITIVE RIG-I:dsRNA_complex_mitochondria
IFN-III POSITIVE IFNL PLPro POSITIVE RIG-I:dsRNA_complex_mitochondria
ISGs_rna POSITIVE IFNs Riplet:TRIM25_complex POSITIVE RIG-I:dsRNA_complex_mitochondria
ISGs_rna POSITIVE antiviral_proteins ISGs_rna POSITIVE IFNs_complex
ISGs_rna POSITIVE antiviral_proteins_complex
SOCS1 POSITIVE receptor_complex_complex_cell
IFN-III POSITIVE Ifn_lambda_complex
IFN-sensitive-response-element_gene POSITIVE ISGs_rna IFN-sensitive-response-element_gene POSITIVE ISGs_rna
viral_RNA+N-methyl-Guanine_rna POSITIVE 5'cap-viral-RNA_rna viral_RNA+N-methyl-Guanine_rna POSITIVE 5'cap-viral-RNA_rna
viral_RNA_rna POSITIVE viral_RNA+N-methyl-Guanine_rna viral_RNA_rna POSITIVE viral_RNA+N-methyl-Guanine_rna
nsp14 POSITIVE viral_RNA+N-methyl-Guanine_rna nsp14 POSITIVE viral_RNA+N-methyl-Guanine_rna
nsp16 POSITIVE 5'cap-viral-RNA_rna nsp16 POSITIVE 5'cap-viral-RNA_rna
dsRNA_vesicle_rna POSITIVE dsRNA_rna_innate_immune_cell dsRNA_vesicle_rna POSITIVE dsRNA_rna
RNA_rna POSITIVE dsRNA_rna_innate_immune_cell RNA_rna POSITIVE dsRNA_rna
PLPro POSITIVE RIG-I
IRF1_phosphorylated POSITIVE IFN-III_rna IRF1_phosphorylated POSITIVE IFN-III_rna
IFN-III_rna POSITIVE IFN-III IFN-III_rna POSITIVE IFN-III
Riplet_/_TRIM25 POSITIVE RIG-I_ubiquitinated
Executable Modules/SBML_qual_build/sif/IFN-lambda_stable_raw.sif
View file @ 48692107
...@@ -3,43 +3,45 @@ csa10 POSITIVE csa9 ...@@ -3,43 +3,45 @@ csa10 POSITIVE csa9
csa10 POSITIVE csa11 csa10 POSITIVE csa11
csa10 POSITIVE csa12 csa10 POSITIVE csa12
csa10 POSITIVE csa34 csa10 POSITIVE csa34
csa10 POSITIVE sa1 csa10 POSITIVE csa60
csa9 POSITIVE csa10 csa9 POSITIVE csa10
sa1 POSITIVE csa10 csa60 POSITIVE csa10
csa4 POSITIVE sa14 csa4 POSITIVE sa14
csa12 POSITIVE csa4 csa12 POSITIVE csa4
csa12 POSITIVE csa14 csa12 POSITIVE csa14
sa10 POSITIVE csa4 sa10 POSITIVE csa4
sa46 POSITIVE csa11 sa46 POSITIVE csa11
sa11 POSITIVE csa14 sa11 POSITIVE csa14
csa19 POSITIVE sa96 csa41 POSITIVE sa96
sa126 POSITIVE csa19 sa126 POSITIVE csa41
csa24 POSITIVE csa15 csa48 POSITIVE csa15
csa24 POSITIVE csa27 csa48 POSITIVE csa44
sa70 POSITIVE csa15 sa70 POSITIVE csa15
sa70 POSITIVE csa16 sa70 POSITIVE csa16
csa27 POSITIVE csa16 csa44 POSITIVE csa16
csa27 POSITIVE sa2 csa44 POSITIVE csa53
csa27 POSITIVE sa3 csa44 POSITIVE csa59
csa17 POSITIVE sa126 csa17 POSITIVE sa126
sa145 POSITIVE csa17 csa37 POSITIVE csa17
sa145 POSITIVE sa83 csa37 POSITIVE csa36
sa100 POSITIVE csa17 sa100 POSITIVE csa17
sa4 POSITIVE csa12 sa4 POSITIVE csa12
sa6 POSITIVE csa12 sa6 POSITIVE csa12
csa21 POSITIVE sa92 csa21 POSITIVE sa92
sa82 POSITIVE csa21 sa82 POSITIVE csa21
sa82 POSITIVE sa83 sa82 POSITIVE csa36
sa82 POSITIVE sa125 sa82 POSITIVE sa125
csa26 POSITIVE csa27