Commit 48692107 authored by Marek Ostaszewski's avatar Marek Ostaszewski
Browse files

Merge branch 'repo_update' of ssh://git-r3lab-server.uni.lu:8022/covid/models into repo_update

parents 8b0ef50c d8a86220
Pipeline #37178 passed with stages
in 5 minutes and 21 seconds
......@@ -52,6 +52,7 @@ OAS1_EIF2AK_complex POSITIVE Immune_Response_phenotype
OAS1_cytoplasm_active POSITIVE OAS1_EIF2AK_complex
OAS3_cytoplasm_active POSITIVE OAS1_EIF2AK_complex
EIF2AK POSITIVE OAS1_EIF2AK_complex
EIF2AK POSITIVE EIF2AK
OAS2_cytoplasm_active POSITIVE OAS1_EIF2AK_complex
NFKB_NFKBIA_complex POSITIVE NFKBIA
NFKB_NFKBIA_complex POSITIVE NFKB1_cytoplasm
......
......@@ -52,6 +52,7 @@ csa32 POSITIVE sa81
sa50 POSITIVE csa32
sa80 POSITIVE csa32
sa51 POSITIVE csa32
sa51 POSITIVE sa51
sa76 POSITIVE csa32
csa18 POSITIVE sa109
csa18 POSITIVE sa113
......
......@@ -18,12 +18,12 @@ Heme_simple_molecule POSITIVE NADP+_simple_molecule_Cytosol
Heme_simple_molecule POSITIVE Fe2+_ion
Heme_simple_molecule POSITIVE Biliverdin_simple_molecule
Heme_simple_molecule POSITIVE CO_simple_molecule
IDO1 POSITIVE IDO1_complex
apo-IDO1 POSITIVE IDO1_complex
L-Tryptophan_simple_molecule_Cytosol POSITIVE NFK_simple_molecule
L-Tryptophan_simple_molecule_default_compartment POSITIVE L-Tryptophan_simple_molecule_Cytosol
L-Tryptophan_simple_molecule_default_compartment NEGATIVE Effector_T-cell_apoptosis_phenotype
SLC36A4 POSITIVE L-Tryptophan_simple_molecule_Cytosol
IDO1_rna POSITIVE IDO1
IDO1_rna POSITIVE apo-IDO1
H2O_simple_molecule_Cytosol POSITIVE HCOOH_simple_molecule
H2O_simple_molecule_Cytosol POSITIVE L-Kynurenine_simple_molecule
H2O_simple_molecule_Cytosol POSITIVE H+_ion_Cytosol
......@@ -80,12 +80,11 @@ PRPP_simple_molecule POSITIVE NAMN_simple_molecule_Cytosol
QPRT POSITIVE H2O_simple_molecule_Cytosol
QPRT POSITIVE CO2_simple_molecule
QPRT POSITIVE NAMN_simple_molecule_Cytosol
HMOX1 POSITIVE H2O_simple_molecule_Cytosol
HMOX1 POSITIVE NADP+_simple_molecule_Cytosol
HMOX1 POSITIVE HMOX1
HMOX1 POSITIVE Fe2+_ion
HMOX1 POSITIVE Biliverdin_simple_molecule
HMOX1 POSITIVE CO_simple_molecule
HMOX1_Cytosol POSITIVE H2O_simple_molecule_Cytosol
HMOX1_Cytosol POSITIVE NADP+_simple_molecule_Cytosol
HMOX1_Cytosol POSITIVE Fe2+_ion
HMOX1_Cytosol POSITIVE Biliverdin_simple_molecule
HMOX1_Cytosol POSITIVE CO_simple_molecule
NFK_simple_molecule POSITIVE HCOOH_simple_molecule
NFK_simple_molecule POSITIVE L-Kynurenine_simple_molecule
IDO2 POSITIVE NFK_simple_molecule
......@@ -171,10 +170,10 @@ L-Gln_simple_molecule POSITIVE NAD+_simple_molecule_Cytosol
L-Gln_simple_molecule POSITIVE PPi_simple_molecule
L-Gln_simple_molecule POSITIVE L-Glu_simple_molecule
L-Gln_simple_molecule POSITIVE AMP_simple_molecule_Cytosol
NADSYN1 POSITIVE NAD+_simple_molecule_Cytosol
NADSYN1 POSITIVE PPi_simple_molecule
NADSYN1 POSITIVE L-Glu_simple_molecule
NADSYN1 POSITIVE AMP_simple_molecule_Cytosol
NADSYN1_hexamer POSITIVE NAD+_simple_molecule_Cytosol
NADSYN1_hexamer POSITIVE PPi_simple_molecule
NADSYN1_hexamer POSITIVE L-Glu_simple_molecule
NADSYN1_hexamer POSITIVE AMP_simple_molecule_Cytosol
NMN_simple_molecule_Cytosol POSITIVE NAD+_simple_molecule_Cytosol
NMN_simple_molecule_Cytosol POSITIVE PPi(3-)_simple_molecule_Cytosol
NMNAT2:Mg2+_complex POSITIVE NAD+_simple_molecule_Cytosol
......@@ -300,6 +299,7 @@ Na+_ion_default_compartment POSITIVE monocarboxylates_transported_by_SLC5A8_simp
Na+_ion_default_compartment POSITIVE Na+_ion_Cytosol
SLC5A8 POSITIVE monocarboxylates_transported_by_SLC5A8_simple_molecule_Cytosol
SLC5A8 POSITIVE Na+_ion_Cytosol
HMOX1_rna POSITIVE HMOX1
Orf3a POSITIVE HMOX1
HMOX1_rna POSITIVE HMOX1_Cytosol
HMOX1_Cytosol POSITIVE HMOX1_Cytosol
Orf3a POSITIVE HMOX1_Cytosol
CA_simple_molecule POSITIVE T-cell_apoptosis_phenotype
......@@ -80,12 +80,11 @@ sa187 POSITIVE sa199
sa207 POSITIVE sa10
sa207 POSITIVE sa40
sa207 POSITIVE sa199
sa351 POSITIVE sa10
sa351 POSITIVE sa23
sa351 POSITIVE sa351
sa351 POSITIVE sa357
sa351 POSITIVE sa361
sa351 POSITIVE sa362
sa352 POSITIVE sa10
sa352 POSITIVE sa23
sa352 POSITIVE sa357
sa352 POSITIVE sa361
sa352 POSITIVE sa362
sa11 POSITIVE sa15
sa11 POSITIVE sa17
sa7 POSITIVE sa11
......@@ -301,5 +300,6 @@ sa336 POSITIVE sa337
sa269 POSITIVE sa334
sa269 POSITIVE sa337
sa341 POSITIVE sa351
sa350 POSITIVE sa351
sa351 POSITIVE sa352
sa350 POSITIVE sa352
sa373 POSITIVE sa375
# Generated by CaSQ v0.9.6
ASC:MAVS:TRAF3_complex_Cytosol POSITIVE ASC:MAVS:TRAF3_complex_Cytosol
ASC:MAVS_complex POSITIVE ASC:MAVS:TRAF3_complex_Cytosol
TRAF3 POSITIVE ASC:MAVS:TRAF3_complex_Cytosol
TRAF3 POSITIVE TRAF3:SARS_Orf3a_complex_Cytosol
NLRP3:SUGT1:HSP90_complex POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
NLRP3:SUGT1:HSP90_complex POSITIVE SUGT1:HSP90AB1_complex
NLRP3 POSITIVE NLRP3:SUGT1:HSP90_complex
NLRP3 POSITIVE TXNIP:NLRP3_complex
SUGT1:HSP90AB1_complex POSITIVE NLRP3:SUGT1:HSP90_complex
TRAF3:SARS_Orf3a_complex_Cytosol POSITIVE p105_ubiquitinated
NLRP3_oligomer:ASC:proCaspase1_complex POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
NLRP3_oligomer:ASC:proCaspase1_complex POSITIVE CASP1(120-197):CASP1(317-404)_complex
NLRP3_oligomer:ASC:proCaspase1_complex POSITIVE CASP1_Cytosol
NLRP3_oligomer:ASC:proCaspase1_complex POSITIVE CASP1_Cytosol
CTSG POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
CTSG POSITIVE CASP1(120-197):CASP1(317-404)_complex
CTSG POSITIVE CASP1_Cytosol
CTSG POSITIVE CASP1_Cytosol
ASC:MAVS:TRAF3_complex_Cytosol POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
ASC:MAVS:TRAF3_complex_Cytosol POSITIVE TRAF3
ASC:MAVS:TRAF3_complex_Cytosol POSITIVE MAVS
DAMPs_phenotype POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
DAMPs_phenotype POSITIVE SUGT1:HSP90AB1_complex
PAMPs_phenotype POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
PAMPs_phenotype POSITIVE SUGT1:HSP90AB1_complex
NLRP3_Elicitor_Small_Molecules_simple_molecule POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
NLRP3_Elicitor_Small_Molecules_simple_molecule POSITIVE SUGT1:HSP90AB1_complex
NLRP3_Elicitor_Proteins POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
NLRP3_Elicitor_Proteins POSITIVE SUGT1:HSP90AB1_complex
Reactive_Oxygen_Species_simple_molecule POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
Reactive_Oxygen_Species_simple_molecule POSITIVE SUGT1:HSP90AB1_complex
Reactive_Oxygen_Species_simple_molecule POSITIVE TXN_Cytosol
TXNIP:NLRP3_complex POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
TXNIP:NLRP3_complex POSITIVE SUGT1:HSP90AB1_complex
Ca2+_ion POSITIVE NLRP3_oligomer:ASC:proCaspase1_complex
Ca2+_ion POSITIVE SUGT1:HSP90AB1_complex
Caspase-1_Tetramer_complex POSITIVE IL-18_Cytosol
Caspase-1_Tetramer_complex POSITIVE IL-1B_Cytosol
Caspase-1_Tetramer_complex POSITIVE proIL-18_Cytosol
Caspase-1_Tetramer_complex POSITIVE proIL-1B_Cytosol
CASP1(120-197):CASP1(317-404)_complex POSITIVE Caspase-1_Tetramer_complex
TXNIP POSITIVE TXNIP:NLRP3_complex
TXNIP POSITIVE Thioredoxin:TXNIP_complex
TRAF3:SARS_Orf3a_complex_Cytosol POSITIVE ASC:MAVS:TRAF3_complex_Cytosol
NF-KB_COMPLEX:IKBA_complex NEGATIVE Nf-KB_Complex_complex_Nucleoplasm
IKBA_phosphorylated_phosphorylated POSITIVE NF-KB_COMPLEX:IKBA_complex
Nf-KB_Complex_complex_Cytosol POSITIVE NF-KB_COMPLEX:IKBA_complex
Nf-KB_Complex_complex_Cytosol POSITIVE Nf-KB_Complex_complex_Nucleoplasm
p50 POSITIVE Nf-KB_Complex_complex_Cytosol
p65 POSITIVE Nf-KB_Complex_complex_Cytosol
Nf-KB_Complex_complex_Nucleoplasm POSITIVE proIL-18_rna
Nf-KB_Complex_complex_Nucleoplasm POSITIVE proIL-1B_rna
Thioredoxin:TXNIP_complex POSITIVE TXNIP
Thioredoxin:TXNIP_complex POSITIVE TXN_Cytosol
TXN_Cytosol POSITIVE Thioredoxin:TXNIP_complex
TXN_Cytosol POSITIVE TXN_Cytosol
ASC POSITIVE ASC:MAVS_complex
MAVS POSITIVE ASC:MAVS_complex
Orf3a POSITIVE TRAF3:SARS_Orf3a_complex_Cytosol
CO_simple_molecule NEGATIVE Reactive_Oxygen_Species_simple_molecule
proIL-18_Cytosol POSITIVE IL-18_Cytosol
proIL-18_Cytosol POSITIVE proIL-18_Cytosol
proIL-18_rna POSITIVE proIL-18_Cytosol
proIL-1B_Cytosol POSITIVE IL-1B_Cytosol
proIL-1B_Cytosol POSITIVE proIL-1B_Cytosol
proIL-1B_rna POSITIVE proIL-1B_Cytosol
IL-18_Cytosol POSITIVE IL-18_default_compartment
IL-1B_Cytosol POSITIVE IL-1B_default_compartment
p105_ubiquitinated POSITIVE p50
E_Golgi POSITIVE Ca2+_ion
E_ERGIC POSITIVE Ca2+_ion
Heme_simple_molecule POSITIVE NADP+_simple_molecule
Heme_simple_molecule POSITIVE Biliverdin_simple_molecule
Heme_simple_molecule POSITIVE H2O_simple_molecule
Heme_simple_molecule POSITIVE CO_simple_molecule
Heme_simple_molecule POSITIVE Fe2+_ion
O2_simple_molecule POSITIVE NADP+_simple_molecule
O2_simple_molecule POSITIVE Biliverdin_simple_molecule
O2_simple_molecule POSITIVE H2O_simple_molecule
O2_simple_molecule POSITIVE CO_simple_molecule
O2_simple_molecule POSITIVE Fe2+_ion
NADPH_simple_molecule POSITIVE NADP+_simple_molecule
NADPH_simple_molecule POSITIVE Biliverdin_simple_molecule
NADPH_simple_molecule POSITIVE H2O_simple_molecule
NADPH_simple_molecule POSITIVE CO_simple_molecule
NADPH_simple_molecule POSITIVE Fe2+_ion
HMOX1 POSITIVE NADP+_simple_molecule
HMOX1 POSITIVE Biliverdin_simple_molecule
HMOX1 POSITIVE H2O_simple_molecule
HMOX1 POSITIVE CO_simple_molecule
HMOX1 POSITIVE Fe2+_ion
# Generated by CaSQ v0.9.6
csa29 POSITIVE csa27
csa28 POSITIVE csa29
sa99 POSITIVE csa29
sa99 POSITIVE csa24
csa6 POSITIVE csa10
csa6 POSITIVE csa4
sa92 POSITIVE csa6
sa92 POSITIVE csa3
csa4 POSITIVE csa6
csa30 POSITIVE sa84
csa10 POSITIVE csa10
csa10 POSITIVE csa7
csa10 POSITIVE sa170
csa10 POSITIVE sa171
sa26 POSITIVE csa10
sa26 POSITIVE csa7
sa26 POSITIVE sa170
sa26 POSITIVE sa171
csa27 POSITIVE csa10
csa27 POSITIVE sa99
csa27 POSITIVE sa102
sa91 POSITIVE csa10
sa91 POSITIVE csa4
sa90 POSITIVE csa10
sa90 POSITIVE csa4
sa135 POSITIVE csa10
sa135 POSITIVE csa4
sa136 POSITIVE csa10
sa136 POSITIVE csa4
sa1 POSITIVE csa10
sa1 POSITIVE csa4
sa1 POSITIVE sa175
csa3 POSITIVE csa10
csa3 POSITIVE csa4
sa142 POSITIVE csa10
sa142 POSITIVE csa4
csa5 POSITIVE sa16
csa5 POSITIVE sa17
csa5 POSITIVE sa18
csa5 POSITIVE sa172
csa7 POSITIVE csa5
sa8 POSITIVE csa3
sa8 POSITIVE csa1
csa24 POSITIVE csa27
csa21 NEGATIVE csa23
sa82 POSITIVE csa21
csa22 POSITIVE csa21
csa22 POSITIVE csa23
sa83 POSITIVE csa22
sa86 POSITIVE csa22
csa23 POSITIVE sa93
csa23 POSITIVE sa94
csa1 POSITIVE sa8
csa1 POSITIVE sa175
sa7 POSITIVE csa1
sa7 POSITIVE sa175
sa104 POSITIVE csa28
sa102 POSITIVE csa28
sa3 POSITIVE csa24
sa158 NEGATIVE sa1
sa14 POSITIVE sa16
sa14 POSITIVE sa18
sa93 POSITIVE sa14
sa15 POSITIVE sa17
sa15 POSITIVE sa172
sa94 POSITIVE sa15
sa16 POSITIVE sa20
sa17 POSITIVE sa21
sa84 POSITIVE sa83
sa140 POSITIVE sa142
sa146 POSITIVE sa142
sa152 POSITIVE sa155
sa152 POSITIVE sa156
sa152 POSITIVE sa157
sa152 POSITIVE sa158
sa152 POSITIVE sa163
sa154 POSITIVE sa155
sa154 POSITIVE sa156
sa154 POSITIVE sa157
sa154 POSITIVE sa158
sa154 POSITIVE sa163
sa153 POSITIVE sa155
sa153 POSITIVE sa156
sa153 POSITIVE sa157
sa153 POSITIVE sa158
sa153 POSITIVE sa163
sa161 POSITIVE sa155
sa161 POSITIVE sa156
sa161 POSITIVE sa157
sa161 POSITIVE sa158
sa161 POSITIVE sa163
......@@ -6,10 +6,10 @@ BAMBI NEGATIVE TGFB/TGFBR_complex
BMPR1/2/ACTR2_complex POSITIVE SMAD1/5/8_complex
MAPK3 NEGATIVE SMAD1/5/8_complex
MAPK3 NEGATIVE SMAD2/3_complex
3a POSITIVE SMAD1/5/8_complex
3a POSITIVE SMAD2/3_complex
7b_Cell_Membrane POSITIVE SMAD1/5/8_complex
nsp4 POSITIVE SMAD1/5/8_complex
Orf3a POSITIVE SMAD1/5/8_complex
Orf3a POSITIVE SMAD2/3_complex
Nsp7b_Cell_Membrane POSITIVE SMAD1/5/8_complex
E POSITIVE SMAD1/5/8_complex
E3_ubiquitin_ligase_complex_complex NEGATIVE SMAD2/3_complex
SMAD2/3_complex POSITIVE Modulation_Cell_Cycle_phenotype
TGFB/TGFBR_complex POSITIVE SMAD2/3_complex
......@@ -17,9 +17,9 @@ TGFB/TGFBR_complex POSITIVE PP2A_complex
TGFB/TGFBR_complex POSITIVE RHOA
ACVR1 POSITIVE SMAD2/3_complex
ACVR1B POSITIVE SMAD2/3_complex
7b_default_compartment POSITIVE SMAD2/3_complex
Nsp7b_default_compartment POSITIVE SMAD2/3_complex
LTBP1 NEGATIVE TGFB/TGFBR_complex
8 POSITIVE TGFB/TGFBR_complex
Orf8 POSITIVE TGFB/TGFBR_complex
PP2A_complex POSITIVE RPS6KB1_empty
7a POSITIVE PP2A_complex
nsp7 POSITIVE RHOA
Orf7a POSITIVE PP2A_complex
Nsp7 POSITIVE RHOA
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