Commit 23716c4a authored by Marek Ostaszewski's avatar Marek Ostaszewski
Browse files

Merge branch 'integration_new' into 'master'

Integration updates

See merge request !149
parents a0fd3dfa 976a2435
...@@ -96,7 +96,7 @@ construct_overview <- function(elements) { ...@@ -96,7 +96,7 @@ construct_overview <- function(elements) {
### Resource: url to the xml content of the diagram ### Resource: url to the xml content of the diagram
### Type: what kind of file do we integrate ### Type: what kind of file do we integrate
### Name: under which name the diaram is to be shown in the build ### Name: under which name the diaram is to be shown in the build
res <- read.csv(url("https://git-r3lab.uni.lu/covid/models/raw/master/Integration/resources.csv"), res <- read.csv(url("https://git-r3lab.uni.lu/covid/models/raw/master/Integration/MINERVA_build/resources.csv"),
header = T, stringsAsFactors = F) header = T, stringsAsFactors = F)
### Filter only these to be included ### Filter only these to be included
res <- res[res$Include == "Yes",] res <- res[res$Include == "Yes",]
......
...@@ -19,7 +19,7 @@ Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Interferon%20pat ...@@ -19,7 +19,7 @@ Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Interferon%20pat
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/JNK%20pathway/JNK_pathway.xml,CellDesigner_SBML,JNK pathway Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/JNK%20pathway/JNK_pathway.xml,CellDesigner_SBML,JNK pathway
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/RTC-and-transcription/RTC-and-transcription-CD.xml,CellDesigner_SBML,RTC and transcription Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/RTC-and-transcription/RTC-and-transcription-CD.xml,CellDesigner_SBML,RTC and transcription
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/E/E_SARS_CoV_2_22_05_2020.xml,CellDesigner_SBML,E protein interactions Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/E/E_SARS_CoV_2_22_05_2020.xml,CellDesigner_SBML,E protein interactions
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp4_Nsp6/Nsp4_Nsp6_v2.xml,CellDesigner_SBML,Nsp4 and Nsp6 interactions Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp4_Nsp6/Nsp4_Nsp6_v3.xml,CellDesigner_SBML,Nsp4 and Nsp6 interactions
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp9/Nsp9.xml,CellDesigner_SBML,Nsp9 interactions Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp9/Nsp9.xml,CellDesigner_SBML,Nsp9 interactions
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp14/Nsp14.xml,CellDesigner_SBML,Nsp14 and metabolism Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp14/Nsp14.xml,CellDesigner_SBML,Nsp14 and metabolism
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Orf3a/Orf3a.xml,CellDesigner_SBML,Orf3a interactions Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Orf3a/Orf3a.xml,CellDesigner_SBML,Orf3a interactions
......
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