Commit 213e8b8d authored by Marek Ostaszewski's avatar Marek Ostaszewski

Merge branch 'repo_update' into 'master'

Repo update

See merge request !271
parents 47f720e1 87c2d14f
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......@@ -2330,6 +2330,15 @@ Uniprot:P0QGFD
<celldesigner:catalyzed reaction="re4"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#s105">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59632"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s104" id="s104" name="7a" compartment="c2" initialAmount="0">
......@@ -2344,6 +2353,15 @@ Uniprot:P0QGFD
<celldesigner:catalyzed reaction="re4"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#s104">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59635"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s106" id="s106" name="S" compartment="c2" initialAmount="0">
......@@ -2368,6 +2386,15 @@ Uniprot:P0QGFD
<celldesigner:catalyzed reaction="re42"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#s106">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59594"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
<species metaid="s103" id="s103" name="3b" compartment="c2" initialAmount="0">
......@@ -2382,6 +2409,15 @@ Uniprot:P0QGFD
<celldesigner:catalyzed reaction="re36"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
<rdf:Description rdf:about="#s103">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P59633"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
</rdf:RDF>
</annotation>
</species>
</listOfSpecies>
......@@ -2414,7 +2450,7 @@ Uniprot:P0QGFD
</celldesigner:connectScheme>
<celldesigner:line width="1.0" color="ff000000"/>
<celldesigner:listOfModification>
<celldesigner:modification type="PHYSICAL_STIMULATION" modifiers="s49" aliases="csa2" targetLineIndex="-1,4" editPoints="0.6490041839468192,-0.29949358690347117">
<celldesigner:modification type="PHYSICAL_STIMULATION" modifiers="s49" aliases="csa2" targetLineIndex="-1,4" editPoints="0.6490041839468192,-0.29949358690347183">
<celldesigner:connectScheme connectPolicy="direct">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection index="0" value="unknown"/>
......@@ -3290,7 +3326,7 @@ Uniprot:P0QGFD
</celldesigner:linkTarget>
<celldesigner:line width="1.0" color="ff000000"/>
</celldesigner:modification>
<celldesigner:modification type="PHYSICAL_STIMULATION" modifiers="s6" aliases="sa5" targetLineIndex="-1,4" editPoints="0.3049969275981761,-0.14963021895091022">
<celldesigner:modification type="PHYSICAL_STIMULATION" modifiers="s6" aliases="sa5" targetLineIndex="-1,4" editPoints="0.3049969275981761,-0.14963021895091067">
<celldesigner:connectScheme connectPolicy="direct">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection index="0" value="unknown"/>
......
......@@ -160,11 +160,11 @@ cytokine_storm_phenotype POSITIVE IL1B
cytokine_storm_phenotype POSITIVE IL8
cytokine_storm_phenotype POSITIVE IL2RA
IL1B POSITIVE Thrombosis_phenotype_Blood
IL8 POSITIVE Thrombosis_phenotype_Blood
IL2RA POSITIVE Thrombosis_phenotype_Blood
CRP POSITIVE Thrombosis_phenotype_Blood
C4d POSITIVE Thrombosis_phenotype_Blood
C4d POSITIVE C4d_deposition_phenotype
CRP POSITIVE Thrombosis_phenotype_Blood
IL2RA POSITIVE Thrombosis_phenotype_Blood
IL8 POSITIVE Thrombosis_phenotype_Blood
C3 POSITIVE C3a
C3 POSITIVE C3b
MASP1 POSITIVE C2a
......@@ -185,8 +185,8 @@ ACE2_Endothelium,_vascular POSITIVE angiotensin_I-7_simple_molecule
Fibrin_monomer POSITIVE Fibrin_polymer
F13a POSITIVE Fibrin_polymer
platelet_activation_phenotype POSITIVE thrombus_formation_phenotype
MAS1 NEGATIVE thrombus_formation_phenotype
AGTR1_Platelet POSITIVE thrombus_formation_phenotype
MAS1 POSITIVE thrombus_formation_phenotype
K+_ion POSITIVE aldosterone_simple_molecule_Blood
ACTH_simple_molecule POSITIVE aldosterone_simple_molecule_Blood
aldosterone_simple_molecule_Endothelium,_vascular POSITIVE NR3C2
......
......@@ -29,3 +29,4 @@ Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Ubiquination%20a
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Virus%20replication%20cycle/Virus_replication_cycle_stable.xml,CellDesigner_SBML,Virus replication cycle
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Kynurenine%20Pathway/Kynurenine_pathway_stable.xml,CellDesigner_SBML,Kynurenine synthesis pathway
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/TGF%20beta%20pathway/TGFB_pathway_stable.xml,CellDesigner_SBML,TGFbeta signalling
Yes,https://git-r3lab.uni.lu/covid/models/-/raw/repo_update/Curation/Inflammasomes/NLRP3_Activation_stable.xml,NLRP3 inflammasome activation
\ No newline at end of file
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