Pyrimidine_deprivation_stable.xml 456 KB
Newer Older
1 2
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" xmlns:celldesigner="http://www.sbml.org/2001/ns/celldesigner" level="2" version="4">
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
3
<model metaid="pyrimidine_deprivation" id="pyrimidine_deprivation">
4 5 6 7 8
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Ewa Smula's avatar
Ewa Smula committed
9 10 11 12 13 14 15 16 17 18 19 20 21
<body>Author:
<br/>
Zsolt Bocskei, Sanofi R and D, France
<br/>
<br/>
Franck Augé, Sanofi R and D, France
<br/>
<br/>
Anna Niarakis, University of Évry Val d&apos;Essonne, Évry, France
<br/>
<br/>
Description:
Pyrimidine deprivation and immune response related to human coronavirus infection
22 23 24 25
  
</body>
</html>
</notes>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
26 27 28
<annotation>
<celldesigner:extension>
<celldesigner:modelVersion>4.0</celldesigner:modelVersion>
29
<celldesigner:modelDisplay sizeX="3288" sizeY="1500"/>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
30 31 32
<celldesigner:listOfIncludedSpecies>
<celldesigner:species id="s_id_sa108" name="cGAMP">
<celldesigner:notes>
Marek Ostaszewski's avatar
Marek Ostaszewski committed
33 34 35 36 37
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
<body>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
38 39 40 41 42 43
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa108">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
Marek Ostaszewski's avatar
Marek Ostaszewski committed
44 45
</body>
</html>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
46 47 48 49 50 51 52 53 54 55
</celldesigner:notes>
<celldesigner:annotation>
<celldesigner:complexSpecies>s_id_csa4</celldesigner:complexSpecies>
<celldesigner:speciesIdentity>
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>cGAMP</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
<celldesigner:species id="s_id_sa107" name="STING">
56 57 58 59 60
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
61 62 63 64 65 66 67 68
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa107">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
69 70 71
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
72
<celldesigner:complexSpecies>s_id_csa4</celldesigner:complexSpecies>
73 74
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
75
<celldesigner:proteinReference>p_s_id_sa107</celldesigner:proteinReference>
76 77 78 79 80 81
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
82
<celldesigner:species id="s_id_sa106" name="cGAMP">
83 84 85 86 87
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
88 89 90 91 92 93 94 95
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa106">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
96 97 98
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
99
<celldesigner:complexSpecies>s_id_csa3</celldesigner:complexSpecies>
100
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
101 102
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>cGAMP</celldesigner:name>
103 104 105
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
106
<celldesigner:species id="s_id_sa105" name="STING">
107 108 109 110 111 112
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
<body>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
113 114 115 116 117 118
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa105">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
119 120 121 122
</body>
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
123
<celldesigner:complexSpecies>s_id_csa3</celldesigner:complexSpecies>
124 125
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
126 127 128 129
<celldesigner:proteinReference>p_s_id_sa105</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
130 131 132
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
133
<celldesigner:species id="s_id_sa139" name="cGAMP">
134 135 136 137 138
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
139 140 141 142 143 144 145 146
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa139">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
147 148 149
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
150
<celldesigner:complexSpecies>s_id_csa16</celldesigner:complexSpecies>
151
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
152 153
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>cGAMP</celldesigner:name>
154 155 156
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
157
<celldesigner:species id="s_id_sa138" name="STING">
158 159 160 161 162
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
163 164 165 166 167 168 169 170
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa138">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
171 172 173
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
174
<celldesigner:complexSpecies>s_id_csa16</celldesigner:complexSpecies>
175
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
176 177 178 179 180
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p_s_id_sa138</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
181 182 183
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
184
<celldesigner:species id="s_id_sa132" name="LC3">
185 186 187 188 189
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
190 191 192 193 194 195 196 197 198
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
LC3 and Autophagy
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa132">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
199 200 201
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
202
<celldesigner:complexSpecies>s_id_csa13</celldesigner:complexSpecies>
203 204
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
205
<celldesigner:proteinReference>p_s_id_sa132</celldesigner:proteinReference>
206 207 208
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
209
<celldesigner:species id="s_id_sa131" name="cGAMP">
210 211 212 213 214
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
215 216 217 218 219 220 221 222
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa131">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
223 224 225
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
226
<celldesigner:complexSpecies>s_id_csa13</celldesigner:complexSpecies>
227
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
228 229
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>cGAMP</celldesigner:name>
230 231 232
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
233
<celldesigner:species id="s_id_sa130" name="STING">
234 235 236 237 238
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
239 240 241 242 243 244 245 246
<body>
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa130">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
247 248 249
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
250
<celldesigner:complexSpecies>s_id_csa13</celldesigner:complexSpecies>
251 252
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
253
<celldesigner:proteinReference>p_s_id_sa130</celldesigner:proteinReference>
254 255 256 257 258 259
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
260
<celldesigner:species id="s_id_sa101" name="cGAS">
261 262 263 264 265
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309
<body>
Symbol: CGAS
Name: cyclic GMP-AMP synthase
Previous Symbols: C6orf150, MB21D1
HGNC_ID: 21367
EntrezGene_ID: 115004
RefSeq_ID: NM_138441
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa101">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000164430"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:21367"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:115004"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:Q8N884"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:CGAS"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_138441"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
310 311 312
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
313
<celldesigner:complexSpecies>s_id_csa1</celldesigner:complexSpecies>
314
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
315 316
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p_s_id_sa101</celldesigner:proteinReference>
317 318 319
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
320
<celldesigner:species id="s_id_sa102" name="dsDNA">
321 322 323 324 325
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
326 327 328 329 330 331 332 333
<body>
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa102">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
334 335 336
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
337
<celldesigner:complexSpecies>s_id_csa1</celldesigner:complexSpecies>
338
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
339 340
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>dsDNA</celldesigner:name>
341 342 343
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
344
<celldesigner:species id="s_id_sa134" name="MRE11">
345 346 347 348 349
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394
<body>
Symbol: MRE11
Name: MRE11 homolog, double strand break repair nuclease
Previous Symbols: MRE11A
Synonyms: ATLD
HGNC_ID: 7230
EntrezGene_ID: 4361
RefSeq_ID: NM_005591
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa134">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:MRE11"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:4361"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P49959"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000020922"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_005591"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:7230"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
395 396 397
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
398
<celldesigner:complexSpecies>s136</celldesigner:complexSpecies>
399 400
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
401
<celldesigner:proteinReference>p_s_id_sa134</celldesigner:proteinReference>
402 403 404 405 406 407
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
408
<celldesigner:species id="s_id_sa158" name="dsDNA">
409 410 411 412 413
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
414 415 416 417 418 419 420 421
<body>
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa158">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
422 423 424
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
425
<celldesigner:complexSpecies>s136</celldesigner:complexSpecies>
426 427
<celldesigner:speciesIdentity>
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
428
<celldesigner:name>dsDNA</celldesigner:name>
429 430 431
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
432
<celldesigner:species id="s_id_sa127" name="cGAMP">
433 434 435 436 437
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
438 439 440 441 442 443 444 445
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa127">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
446 447 448
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
449
<celldesigner:complexSpecies>s_id_csa11</celldesigner:complexSpecies>
450 451 452 453 454 455
<celldesigner:speciesIdentity>
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>cGAMP</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
456
<celldesigner:species id="s_id_sa126" name="STING">
457 458 459 460 461
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
462 463 464 465 466 467 468 469
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa126">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
470 471 472
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
473
<celldesigner:complexSpecies>s_id_csa11</celldesigner:complexSpecies>
474 475
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
476
<celldesigner:proteinReference>p_s_id_sa126</celldesigner:proteinReference>
477 478 479 480 481 482
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
483
<celldesigner:species id="s_id_sa109" name="TBK1">
484 485 486 487 488
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532
<body>
Symbol: TBK1
Name: TANK binding kinase 1
Synonyms: NAK
HGNC_ID: 11584
EntrezGene_ID: 29110
RefSeq_ID: NM_013254
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa109">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:TBK1"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000183735"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:Q9UHD2"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_013254"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:11584"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:29110"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
533 534 535
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
536
<celldesigner:complexSpecies>s_id_csa5</celldesigner:complexSpecies>
537
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
538 539
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p_s_id_sa109</celldesigner:proteinReference>
540 541 542
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
543
<celldesigner:species id="s_id_sa161" name="RAD50">
544 545 546 547 548
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592
<body>
Symbol: RAD50
Name: RAD50 double strand break repair protein
Synonyms: RAD50-2, hRad50
HGNC_ID: 9816
EntrezGene_ID: 10111
RefSeq_ID: NM_005732
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa161">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:10111"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_005732"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:Q92878"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RAD50"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000113522"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:9816"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
593 594 595
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
596
<celldesigner:complexSpecies>s_id_csa24</celldesigner:complexSpecies>
597
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
598 599 600 601 602
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p_s_id_sa161</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
603 604 605
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
606
<celldesigner:species id="s_id_sa160" name="MRE11">
607 608 609 610 611
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656
<body>
Symbol: MRE11
Name: MRE11 homolog, double strand break repair nuclease
Previous Symbols: MRE11A
Synonyms: ATLD
HGNC_ID: 7230
EntrezGene_ID: 4361
RefSeq_ID: NM_005591
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa160">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:MRE11"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:4361"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P49959"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000020922"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_005591"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:7230"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
657 658 659
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
660
<celldesigner:complexSpecies>s_id_csa24</celldesigner:complexSpecies>
661 662
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
663 664 665 666
<celldesigner:proteinReference>p_s_id_sa160</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
667 668 669
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
670
<celldesigner:species id="s_id_sa159" name="dsDNA">
671 672 673 674 675
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
676 677 678 679 680 681 682 683
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa159">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
684 685 686
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
687
<celldesigner:complexSpecies>s_id_csa24</celldesigner:complexSpecies>
688
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
689 690
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>dsDNA</celldesigner:name>
691 692 693
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
694
<celldesigner:species id="s_id_sa125" name="RAD50">
695 696 697 698 699
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743
<body>
Symbol: RAD50
Name: RAD50 double strand break repair protein
Synonyms: RAD50-2, hRad50
HGNC_ID: 9816
EntrezGene_ID: 10111
RefSeq_ID: NM_005732
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa125">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:10111"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_005732"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:Q92878"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:RAD50"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000113522"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:9816"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
744 745 746
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
747
<celldesigner:complexSpecies>s_id_csa10</celldesigner:complexSpecies>
748 749
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
750 751 752 753
<celldesigner:proteinReference>p_s_id_sa125</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
754 755 756
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
757
<celldesigner:species id="s_id_sa123" name="dsDNA">
758 759 760 761 762
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
763 764 765 766 767 768 769 770
<body>
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa123">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
771 772 773
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
774
<celldesigner:complexSpecies>s_id_csa10</celldesigner:complexSpecies>
775
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
776 777
<celldesigner:class>SIMPLE_MOLECULE</celldesigner:class>
<celldesigner:name>dsDNA</celldesigner:name>
778 779 780
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
781
<celldesigner:species id="s_id_sa124" name="MRE11">
782 783 784 785 786
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831
<body>
Symbol: MRE11
Name: MRE11 homolog, double strand break repair nuclease
Previous Symbols: MRE11A
Synonyms: ATLD
HGNC_ID: 7230
EntrezGene_ID: 4361
RefSeq_ID: NM_005591
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa124">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc.symbol:MRE11"/></rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:4361"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:uniprot:P49959"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ensembl:ENSG00000020922"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NM_005591"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:7230"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<dcterms:modified rdf:parseType="Resource"/>
</rdf:Description>
</rdf:RDF>
</body>
832 833 834
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
835
<celldesigner:complexSpecies>s_id_csa10</celldesigner:complexSpecies>
836 837
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
838
<celldesigner:proteinReference>p_s_id_sa124</celldesigner:proteinReference>
839 840 841 842 843 844
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
845
<celldesigner:species id="s133" name=" RRM1">
846 847 848 849 850 851 852 853 854
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
<body/>
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
855
<celldesigner:complexSpecies>s135</celldesigner:complexSpecies>
856
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
857 858 859 860 861
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>pr61</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
862 863 864
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
865
<celldesigner:species id="s134" name="RRM2">
866 867 868 869 870 871 872 873 874
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
<body/>
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
875
<celldesigner:complexSpecies>s135</celldesigner:complexSpecies>
876 877
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
878 879 880 881
<celldesigner:proteinReference>pr62</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
</celldesigner:state>
882 883 884
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
885
<celldesigner:species id="s139" name="TBK1">
886 887 888 889 890
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
891 892 893 894 895 896 897 898 899 900 901
<body>
Symbol: TBK1
Name: TANK binding kinase 1
Synonyms: NAK
HGNC_ID: 11584
EntrezGene_ID: 29110
RefSeq_ID: NM_013254
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
</body>
</html>
902 903
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
904
<celldesigner:complexSpecies>s_id_csa20</celldesigner:complexSpecies>
905 906
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
907
<celldesigner:proteinReference>p_s_id_sa80</celldesigner:proteinReference>
908 909 910
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
911
<celldesigner:species id="s_id_sa149" name="STING_p">
912 913 914 915 916
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
917 918 919 920 921 922 923 924
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa149">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
925 926 927
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
928
<celldesigner:complexSpecies>s_id_csa20</celldesigner:complexSpecies>
929 930
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
931
<celldesigner:proteinReference>p_s_id_sa110</celldesigner:proteinReference>
932 933
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
934 935 936
<celldesigner:listOfModifications>
<celldesigner:modification residue="rs1" state="phosphorylated"/>
</celldesigner:listOfModifications>
937 938 939 940
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
941
<celldesigner:species id="s_id_sa110" name="STING_p">
942 943 944 945 946
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
947 948 949 950 951 952 953 954
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa110">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
955 956 957
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
958
<celldesigner:complexSpecies>s_id_csa5</celldesigner:complexSpecies>
959 960
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
961 962 963 964 965 966 967
<celldesigner:proteinReference>p_s_id_sa110</celldesigner:proteinReference>
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
<celldesigner:listOfModifications>
<celldesigner:modification residue="rs1" state="phosphorylated"/>
</celldesigner:listOfModifications>
</celldesigner:state>
968 969 970
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
971
<celldesigner:species id="s_id_sa112" name="NFKB1">
972 973 974 975 976
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
977 978 979 980 981 982 983 984
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa112">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
985 986 987
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
988
<celldesigner:complexSpecies>s_id_csa6</celldesigner:complexSpecies>
989
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
990 991
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>pr64</celldesigner:proteinReference>
992 993 994
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
995
<celldesigner:species id="s_id_sa111" name="RELA">
996 997 998 999 1000
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1001 1002 1003 1004 1005 1006 1007 1008
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa111">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
1009 1010 1011
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1012
<celldesigner:complexSpecies>s_id_csa6</celldesigner:complexSpecies>
1013 1014
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1015
<celldesigner:proteinReference>pr65</celldesigner:proteinReference>
1016 1017 1018
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1019
<celldesigner:species id="s140" name="RELA">
1020 1021 1022 1023 1024
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1025 1026 1027 1028 1029 1030 1031 1032
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa111">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
1033 1034 1035
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1036
<celldesigner:complexSpecies>s_id_csa19</celldesigner:complexSpecies>
1037 1038
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1039
<celldesigner:proteinReference>pr65</celldesigner:proteinReference>
1040 1041 1042
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1043
<celldesigner:species id="s141" name="NFKB1">
1044 1045 1046 1047 1048
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1049 1050 1051 1052 1053 1054 1055 1056
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa112">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
1057 1058 1059
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1060
<celldesigner:complexSpecies>s_id_csa19</celldesigner:complexSpecies>
1061
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1062 1063
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>pr64</celldesigner:proteinReference>
1064 1065 1066
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1067
<celldesigner:species id="s_id_csa21" name="NF_minus_kB">
1068 1069 1070 1071 1072
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1073 1074 1075 1076 1077 1078 1079 1080
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 3
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_csa21">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
1081 1082 1083
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1084
<celldesigner:complexSpecies>s147</celldesigner:complexSpecies>
1085
<celldesigner:speciesIdentity>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1086 1087
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>NF_minus_kB</celldesigner:name>
1088 1089 1090
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1091
<celldesigner:species id="s144" name="NFKB1">
1092 1093 1094 1095 1096
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1097 1098 1099 1100 1101 1102 1103 1104
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa112">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
1105 1106 1107
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1108
<celldesigner:complexSpecies>s_id_csa21</celldesigner:complexSpecies>
1109 1110
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1111
<celldesigner:proteinReference>pr64</celldesigner:proteinReference>
1112 1113 1114
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1115
<celldesigner:species id="s145" name="RELA">
1116 1117 1118 1119 1120
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154
<body>
SemanticZoomLevelVisibility: 3
SemanticZoomLevelTransparency: 0
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s_id_sa111">
<dcterms:modified rdf:parseType="Resource"/></rdf:Description>
</rdf:RDF>
</body>
</html>
</celldesigner:notes>
<celldesigner:annotation>
<celldesigner:complexSpecies>s_id_csa21</celldesigner:complexSpecies>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>pr65</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
<celldesigner:species id="s146" name="IRF3">
<celldesigner:notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
<body>
Symbol: IRF3
Name: interferon regulatory factor 3
HGNC_ID: 6118
EntrezGene_ID: 3661
RefSeq_ID: NM_001571
SemanticZoomLevelVisibility: 1
SemanticZoomLevelTransparency: 0
Charge: 0
</body>
1155 1156 1157
</html>
</celldesigner:notes>
<celldesigner:annotation>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1158
<celldesigner:complexSpecies>s147</celldesigner:complexSpecies>
1159 1160
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1161
<celldesigner:proteinReference>p_s_id_sa84</celldesigner:proteinReference>
1162 1163
<celldesigner:state>
<celldesigner:homodimer>2</celldesigner:homodimer>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1164 1165 1166
<celldesigner:listOfModifications>
<celldesigner:modification residue="rs1" state="phosphorylated"/>
</celldesigner:listOfModifications>
1167 1168 1169 1170 1171 1172
</celldesigner:state>
</celldesigner:speciesIdentity>
</celldesigner:annotation>
</celldesigner:species>
</celldesigner:listOfIncludedSpecies>
<celldesigner:listOfCompartmentAliases>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1173
<celldesigner:compartmentAlias id="ca2" compartment="s_id_ca2">
1174
<celldesigner:class>SQUARE</celldesigner:class>
1175 1176
<celldesigner:bounds x="115.5" y="379.5" w="431.0" h="215.0"/>
<celldesigner:namePoint x="150.5" y="414.0"/>
1177 1178 1179 1180
<celldesigner:doubleLine thickness="30.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1181 1182
<celldesigner:compartmentAlias id="ca6" compartment="s_id_ca6">
<celldesigner:class>OVAL</celldesigner:class>
1183 1184
<celldesigner:bounds x="1983.0" y="371.0" w="623.0" h="329.0"/>
<celldesigner:namePoint x="2273.5" y="650.3155736958557"/>
1185 1186 1187 1188
<celldesigner:doubleLine thickness="12.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1189 1190
<celldesigner:compartmentAlias id="ca8" compartment="s_id_ca8">
<celldesigner:class>OVAL</celldesigner:class>
1191 1192
<celldesigner:bounds x="2499.0" y="1034.0" w="150.0" h="140.0"/>
<celldesigner:namePoint x="2514.0" y="1134.0"/>
1193 1194 1195 1196
<celldesigner:doubleLine thickness="12.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1197 1198
<celldesigner:compartmentAlias id="ca9" compartment="s_id_ca9">
<celldesigner:class>SQUARE</celldesigner:class>
1199 1200
<celldesigner:bounds x="2952.0" y="1034.0" w="197.0" h="134.0"/>
<celldesigner:namePoint x="2985.0" y="1115.0"/>
1201 1202 1203 1204
<celldesigner:doubleLine thickness="12.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1205
<celldesigner:compartmentAlias id="ca5" compartment="s_id_ca5">
1206
<celldesigner:class>OVAL</celldesigner:class>
1207 1208
<celldesigner:bounds x="2777.0" y="377.0" w="413.0" h="270.0"/>
<celldesigner:namePoint x="2898.9586668095526" y="395.210448229029"/>
1209 1210 1211 1212
<celldesigner:doubleLine thickness="12.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1213
<celldesigner:compartmentAlias id="ca7" compartment="s_id_ca7">
1214
<celldesigner:class>SQUARE</celldesigner:class>
1215 1216
<celldesigner:bounds x="2702.5" y="1036.5" w="197.0" h="141.0"/>
<celldesigner:namePoint x="2705.5" y="1120.0"/>
1217 1218 1219 1220
<celldesigner:doubleLine thickness="12.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1221 1222
<celldesigner:compartmentAlias id="ca3" compartment="s_id_ca3">
<celldesigner:class>SQUARE</celldesigner:class>
1223 1224
<celldesigner:bounds x="2599.0" y="687.0" w="354.0" h="194.0"/>
<celldesigner:namePoint x="2802.0" y="836.5"/>
1225 1226 1227 1228
<celldesigner:doubleLine thickness="12.0" outerWidth="2.0" innerWidth="1.0"/>
<celldesigner:paint color="ffcccc00" scheme="Color"/>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:compartmentAlias>
Marek Ostaszewski's avatar
Updates  
Marek Ostaszewski committed
1229
<celldesigner:compartmentAlias id="ca10" compartment=