Gitlab is now using https://gitlab.lcsb.uni.lu as it's primary address. Please update your bookmarks. FAQ.

Pyrimidine_deprivation_stable.sif 7.28 KB
Newer Older
cylon-x's avatar
cylon-x committed
1
# Generated by CaSQ v0.9.6
artenobot's avatar
artenobot committed
2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
IFNB1_space_expression_space_complex_complex POSITIVE IFNA1_rna
IFNB1_space_expression_space_complex_complex POSITIVE IFNB1_rna
NF-kB_complex POSITIVE IFNB1_space_expression_space_complex_complex
IRF3_phosphorylated POSITIVE IFNB1_space_expression_space_complex_complex
cGAMP:STING_complex_Perinuclear_space_Golgi POSITIVE STING:TBK1_complex_Perinuclear_space_Golgi
cGAMP:STING_complex_Endoplamatic_space_reticulum POSITIVE cGAMP:STING_complex_Perinuclear_space_Golgi
cGAMP:STING_complex_Endoplamatic_space_reticulum POSITIVE cGAMP-STING_complex
cGAMP_simple_molecule POSITIVE cGAMP:STING_complex_Endoplamatic_space_reticulum
STING_Endoplamatic_space_reticulum POSITIVE cGAMP:STING_complex_Endoplamatic_space_reticulum
STING_Endoplamatic_space_reticulum POSITIVE STING_Perinuclear_space_Golgi
cGAMP:STING:LC3_complex POSITIVE HCoVs_autophagy_(WP4863)_phenotype
WIPI2 POSITIVE cGAMP:STING:LC3_complex
cGAMP-STING_complex POSITIVE cGAMP:STING:LC3_complex
cGAS:dsDNA_complex POSITIVE cGAMP_simple_molecule
dsDNA_simple_molecule POSITIVE cGAS:dsDNA_complex
dsDNA_simple_molecule POSITIVE MRE11:RAD50:DNA_complex_Pulmonary_space_endothelial_space_cell
dsDNA_simple_molecule POSITIVE DNA_gene
cGAS POSITIVE cGAS:dsDNA_complex
STING:TBK1_complex_Perinuclear_space_Golgi POSITIVE STING:TBK1_complex_Endolysozome
TBK1 POSITIVE STING:TBK1_complex_Perinuclear_space_Golgi
STING_Perinuclear_space_Golgi POSITIVE STING:TBK1_complex_Perinuclear_space_Golgi
SAR1A POSITIVE cGAMP-STING_complex
STING:TBK1_complex_Endolysozome POSITIVE IRF3_phosphorylated
MRE11:RAD50:DNA_complex_Endoplamatic_space_reticulum POSITIVE STING_Perinuclear_space_Golgi
MRE11:RAD50:DNA_complex_Pulmonary_space_endothelial_space_cell POSITIVE MRE11:RAD50:DNA_complex_Endoplamatic_space_reticulum
MRE11 POSITIVE MRE11:RAD50:DNA_complex_Pulmonary_space_endothelial_space_cell
cytidine_simple_molecule POSITIVE CMP_simple_molecule
cytidine_simple_molecule POSITIVE uridine_simple_molecule
cylon-x's avatar
cylon-x committed
30 31 32 33 34 35 36 37 38 39 40 41 42 43 44
H2O_simple_molecule POSITIVE Pi_simple_molecule
H2O_simple_molecule POSITIVE ADP_simple_molecule
H2O_simple_molecule POSITIVE L-Glu_simple_molecule
H2O_simple_molecule POSITIVE CAP_simple_molecule
N-carbamoyl-L-aspartate_simple_molecule POSITIVE H2O_simple_molecule
N-carbamoyl-L-aspartate_simple_molecule POSITIVE (S)-dihydroorotate_simple_molecule
H+simple_molecule POSITIVE H2O_simple_molecule
H+simple_molecule POSITIVE (S)-dihydroorotate_simple_molecule
CAD POSITIVE H2O_simple_molecule
CAD POSITIVE Pi_simple_molecule
CAD POSITIVE (S)-dihydroorotate_simple_molecule
CAD POSITIVE ADP_simple_molecule
CAD POSITIVE N-carbamoyl-L-aspartate_simple_molecule
CAD POSITIVE L-Glu_simple_molecule
CAD POSITIVE CAP_simple_molecule
artenobot's avatar
artenobot committed
45 46 47 48 49 50 51 52 53 54
UMP_simple_molecule POSITIVE UDP_simple_molecule
uridine_simple_molecule POSITIVE UMP_simple_molecule
UCK2 POSITIVE UMP_simple_molecule
UCK2 POSITIVE CMP_simple_molecule
orotidine_space_5'-monophosphate_simple_molecule POSITIVE UMP_simple_molecule
orotidine_space_5'-monophosphate_simple_molecule POSITIVE CO2_simple_molecule
UMPS POSITIVE UMP_simple_molecule
UMPS POSITIVE PPi_simple_molecule
UMPS POSITIVE orotidine_space_5'-monophosphate_simple_molecule
UMPS POSITIVE CO2_simple_molecule
cylon-x's avatar
cylon-x committed
55 56 57 58 59
ATP_simple_molecule POSITIVE cGAMP_simple_molecule
ATP_simple_molecule POSITIVE Pi_simple_molecule
ATP_simple_molecule POSITIVE ADP_simple_molecule
ATP_simple_molecule POSITIVE L-Glu_simple_molecule
ATP_simple_molecule POSITIVE CAP_simple_molecule
artenobot's avatar
artenobot committed
60 61 62 63 64 65 66 67 68 69 70 71 72 73
GTP_simple_molecule POSITIVE cGAMP_simple_molecule
RTC_and_transcription_pw_phenotype POSITIVE RNA_space_biosynthesis_phenotype
dCDP_simple_molecule POSITIVE dCTP_simple_molecule
CDP_simple_molecule POSITIVE dCDP_simple_molecule
CDP_simple_molecule POSITIVE CTP_simple_molecule
ribonucleoside-diphosphate_reductase_complex POSITIVE dCDP_simple_molecule
ribonucleoside-diphosphate_reductase_complex POSITIVE dUDP_simple_molecule
UDP_simple_molecule POSITIVE UTP_simple_molecule
UDP_simple_molecule POSITIVE dUDP_simple_molecule
CMPK POSITIVE UDP_simple_molecule
CMPK POSITIVE CDP_simple_molecule
dTMP_simple_molecule POSITIVE dTDP_simple_molecule
dUMP_simple_molecule POSITIVE dTMP_simple_molecule
TYMS POSITIVE dTMP_simple_molecule
artenobot's avatar
artenobot committed
74 75
IFNA1_Pulmonary_space_endothelial_space_cell POSITIVE IFNA1_default_compartment
IFNA1_rna POSITIVE IFNA1_Pulmonary_space_endothelial_space_cell
cylon-x's avatar
cylon-x committed
76
L-Gln_simple_molecule POSITIVE Pi_simple_molecule
artenobot's avatar
artenobot committed
77 78 79
L-Gln_simple_molecule POSITIVE ADP_simple_molecule
L-Gln_simple_molecule POSITIVE L-Glu_simple_molecule
L-Gln_simple_molecule POSITIVE CAP_simple_molecule
cylon-x's avatar
cylon-x committed
80
HCO3-simple_molecule POSITIVE Pi_simple_molecule
artenobot's avatar
artenobot committed
81 82 83
HCO3-simple_molecule POSITIVE ADP_simple_molecule
HCO3-simple_molecule POSITIVE L-Glu_simple_molecule
HCO3-simple_molecule POSITIVE CAP_simple_molecule
cylon-x's avatar
cylon-x committed
84 85 86 87
CAP_simple_molecule POSITIVE Pi_simple_molecule
CAP_simple_molecule POSITIVE N-carbamoyl-L-aspartate_simple_molecule
L-Asp_simple_molecule POSITIVE Pi_simple_molecule
L-Asp_simple_molecule POSITIVE N-carbamoyl-L-aspartate_simple_molecule
artenobot's avatar
artenobot committed
88 89 90 91 92 93 94
(S)-dihydroorotate_simple_molecule POSITIVE QH2_simple_molecule
(S)-dihydroorotate_simple_molecule POSITIVE orotate_simple_molecule
dUTP_simple_molecule POSITIVE dUMP_simple_molecule
DUT POSITIVE dUMP_simple_molecule
dCMP_simple_molecule POSITIVE dUMP_simple_molecule
DCTD POSITIVE dUMP_simple_molecule
CMP_simple_molecule POSITIVE CDP_simple_molecule
artenobot's avatar
artenobot committed
95 96 97 98
IFNB1_default_compartment POSITIVE HCoVs_Type_I_Ifn_signalling(WP4868)_phenotype
IFNB1_default_compartment POSITIVE Interferon_1_pathway_phenotype
IFNB1_default_compartment POSITIVE HCoVs_IFN_induction_WP4880_phenotype
IFNB1_Pulmonary_space_endothelial_space_cell POSITIVE IFNB1_default_compartment
artenobot's avatar
artenobot committed
99 100 101 102 103 104 105
dTTP_simple_molecule POSITIVE DNA_gene
DNA_space_biosynthesis_phenotype POSITIVE DNA_gene
virus_space_replication_phenotype NEGATIVE DNA_gene
dTDP_simple_molecule POSITIVE dTTP_simple_molecule
dTYMK POSITIVE dTDP_simple_molecule
DNA_damage_phenotype POSITIVE dsDNA_simple_molecule
UTP_simple_molecule POSITIVE CTP_simple_molecule
cylon-x's avatar
cylon-x committed
106 107 108 109
NME1 POSITIVE UTP_simple_molecule
NME1 POSITIVE dCTP_simple_molecule
NME1 POSITIVE dUTP_simple_molecule
NME1 POSITIVE CTP_simple_molecule
artenobot's avatar
artenobot committed
110 111 112 113 114
orotate_simple_molecule POSITIVE PPi_simple_molecule
orotate_simple_molecule POSITIVE orotidine_space_5'-monophosphate_simple_molecule
PRPP_simple_molecule POSITIVE PPi_simple_molecule
PRPP_simple_molecule POSITIVE orotidine_space_5'-monophosphate_simple_molecule
CDA POSITIVE uridine_simple_molecule
artenobot's avatar
artenobot committed
115 116 117 118
IFNB1_rna POSITIVE IFNB1_Pulmonary_space_endothelial_space_cell
IFNA1_default_compartment POSITIVE HCoVs_Type_I_Ifn_signalling(WP4868)_phenotype
IFNA1_default_compartment POSITIVE Interferon_1_pathway_phenotype
IFNA1_default_compartment POSITIVE HCoVs_IFN_induction_WP4880_phenotype
artenobot's avatar
artenobot committed
119 120 121 122 123 124 125 126 127 128 129 130 131 132
dCTP_simple_molecule POSITIVE dCMP_simple_molecule
DCTPP1 POSITIVE dCMP_simple_molecule
CoQ_simple_molecule POSITIVE QH2_simple_molecule
CoQ_simple_molecule POSITIVE orotate_simple_molecule
dihydroorotate_space_dehydrogenase_space_holoenzyme_simple_molecule POSITIVE QH2_simple_molecule
dihydroorotate_space_dehydrogenase_space_holoenzyme_simple_molecule POSITIVE orotate_simple_molecule
P1788_simple_molecule NEGATIVE QH2_simple_molecule
P1788_simple_molecule NEGATIVE orotate_simple_molecule
Teriflunomide_drug NEGATIVE QH2_simple_molecule
Teriflunomide_drug NEGATIVE orotate_simple_molecule
Teriflunomide_drug POSITIVE DNA_damage_phenotype
dUDP_simple_molecule POSITIVE dUTP_simple_molecule
CTP_simple_molecule POSITIVE RTC_and_transcription_pw_phenotype
CTPS1 POSITIVE CTP_simple_molecule