Gitlab is now using https://gitlab.lcsb.uni.lu as it's primary address. Please update your bookmarks. FAQ.

Apoptosis_stable.sbml 45.3 KB
Newer Older
artenobot's avatar
artenobot committed
1
<?xml version='1.0' encoding='utf-8'?>
cylon-x's avatar
cylon-x committed
2
<sbml xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" level="3" version="1" layout:required="false" xmlns="http://www.sbml.org/sbml/level3/version1/core" qual:required="true" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:qual="http://www.sbml.org/sbml/level3/version1/qual/version1"><model id="model_id"><listOfCompartments><compartment constant="true" id="comp1" /></listOfCompartments><layout:listOfLayouts><layout:layout id="layout1"><layout:dimensions width="1350" height="1200" /><layout:listOfAdditionalGraphicalObjects><layout:generalGlyph layout:reference="csa2" layout:id="csa2_glyph"><layout:boundingBox><layout:position layout:x="360.0" layout:y="79.75" /><layout:dimensions layout:height="120.25" layout:width="101.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa3" layout:id="csa3_glyph"><layout:boundingBox><layout:position layout:x="1149.0" layout:y="615.0" /><layout:dimensions layout:height="150.0" layout:width="140.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa5" layout:id="csa5_glyph"><layout:boundingBox><layout:position layout:x="486.0" layout:y="693.0" /><layout:dimensions layout:height="148.0" layout:width="146.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa1" layout:id="csa1_glyph"><layout:boundingBox><layout:position layout:x="710.0" layout:y="83.0" /><layout:dimensions layout:height="120.0" layout:width="101.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa6" layout:id="csa6_glyph"><layout:boundingBox><layout:position layout:x="822.125" layout:y="234.375" /><layout:dimensions layout:height="117.0" layout:width="117.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa11" layout:id="csa11_glyph"><layout:boundingBox><layout:position layout:x="1013.0" layout:y="470.5" /><layout:dimensions layout:height="156.0" layout:width="111.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa9" layout:id="sa9_glyph"><layout:boundingBox><layout:position layout:x="211.0" layout:y="275.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa13" layout:id="sa13_glyph"><layout:boundingBox><layout:position layout:x="121.125" layout:y="421.375" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa15" layout:id="sa15_glyph"><layout:boundingBox><layout:position layout:x="121.125" layout:y="631.375" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa18" layout:id="sa18_glyph"><layout:boundingBox><layout:position layout:x="121.125" layout:y="511.375" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa22" layout:id="sa22_glyph"><layout:boundingBox><layout:position layout:x="642.125" layout:y="409.5" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa25" layout:id="sa25_glyph"><layout:boundingBox><layout:position layout:x="998.0" layout:y="743.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa27" layout:id="sa27_glyph"><layout:boundingBox><layout:position layout:x="975.0" layout:y="682.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa28" layout:id="sa28_glyph"><layout:boundingBox><layout:position layout:x="570.0" layout:y="595.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa30" layout:id="sa30_glyph"><layout:boundingBox><layout:position layout:x="1000.0" layout:y="958.75" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa39" layout:id="sa39_glyph"><layout:boundingBox><layout:position layout:x="121.125" layout:y="751.375" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa41" layout:id="sa41_glyph"><layout:boundingBox><layout:position layout:x="600.0" layout:y="1014.5" /><layout:dimensions layout:height="65.0" layout:width="240.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa42" layout:id="sa42_glyph"><layout:boundingBox><layout:position layout:x="672.0" layout:y="661.5" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa43" layout:id="sa43_glyph"><layout:boundingBox><layout:position layout:x="904.0" layout:y="358.5" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa44" layout:id="sa44_glyph"><layout:boundingBox><layout:position layout:x="649.125" layout:y="226.375" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa48" layout:id="sa48_glyph"><layout:boundingBox><layout:position layout:x="784.0" layout:y="878.5" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa49" layout:id="sa49_glyph"><layout:boundingBox><layout:position layout:x="670.0" layout:y="822.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa69" layout:id="sa69_glyph"><layout:boundingBox><layout:position layout:x="904.0" layout:y="409.5" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa72" layout:id="sa72_glyph"><layout:boundingBox><layout:position layout:x="250.0" layout:y="895.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa73" layout:id="sa73_glyph"><layout:boundingBox><layout:position layout:x="250.0" layout:y="940.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa74" layout:id="sa74_glyph"><layout:boundingBox><layout:position layout:x="250.0" layout:y="985.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa75" layout:id="sa75_glyph"><layout:boundingBox><layout:position layout:x="250.0" layout:y="850.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa76" layout:id="sa76_glyph"><layout:boundingBox><layout:position layout:x="250.0" layout:y="805.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa77" layout:id="sa77_glyph"><layout:boundingBox><layout:position layout:x="250.0" layout:y="1030.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa78" layout:id="sa78_glyph"><layout:boundingBox><layout:position layout:x="642.125" layout:y="466.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph></layout:listOfAdditionalGraphicalObjects></layout:layout></layout:listOfLayouts><qual:listOfQualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="FAS/FASL_complex" qual:constant="true" qual:id="csa2"><annotation><rdf:RDF><rdf:Description rdf:about="#s2"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:FAS/FASL_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s2" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BAD/BBC3/BCL2L11_complex" qual:constant="false" qual:id="csa3"><annotation><rdf:RDF><rdf:Description rdf:about="#s143"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BCL2/MCL1/BCL2L1_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s143" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Apoptosome_complex" qual:constant="false" qual:id="csa5"><annotation><rdf:RDF><rdf:Description rdf:about="#s33"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CYCS&amp;APAF1&amp;CASP9&amp;!AKT1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s33" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="TNF/TNFRSF1A_complex" qual:constant="true" qual:id="csa1"><annotation><rdf:RDF><rdf:Description rdf:about="#s160"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TNF/TNFRSF1A_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s160" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="TRADD/FADD_complex" qual:constant="false" qual:id="csa6"><annotation><rdf:RDF><rdf:Description rdf:about="#s41"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TRADD&amp;FADD&amp;TNF/TNFRSF1A_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s41" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BCL2/MCL1/BCL2L1_complex" qual:constant="false" qual:id="csa11"><annotation><rdf:RDF><rdf:Description rdf:about="#s156"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf7a|E&amp;!BAD" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s156" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="FADD" qual:constant="false" qual:id="sa9"><annotation><rdf:RDF><rdf:Description rdf:about="#s111"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:FADD&amp;FAS/FASL_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s111" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CASP8" qual:constant="false" qual:id="sa13"><annotation><rdf:RDF><rdf:Description rdf:about="#s112"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TRADD/FADD_complex|FADD&amp;CASP8" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s112" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CASP3" qual:constant="false" qual:id="sa15"><annotation><rdf:RDF><rdf:Description rdf:about="#s113"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CASP8|CASP9&amp;CASP3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s113" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CASP9" qual:constant="false" qual:id="sa18"><annotation><rdf:RDF><rdf:Description rdf:about="#s114"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CASP9&amp;Apoptosome_complex&amp;!AKT1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s114" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BID" qual:constant="false" qual:id="sa22"><annotation><rdf:RDF><rdf:Description rdf:about="#s115"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BID&amp;CASP8" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s115" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CYCS" qual:constant="false" qual:id="sa25"><annotation><rdf:RDF><rdf:Description rdf:about="#s20"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MAPK14" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s20" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="APAF1" qual:constant="true" qual:id="sa27"><annotation><rdf:RDF><rdf:Description rdf:about="#s21"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:APAF1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s21" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="AKT1" qual:constant="false" qual:id="sa28"><annotation><rdf:RDF><rdf:Description rdf:about="#s116"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:AKT1&amp;!M" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s116" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BAX" qual:constant="false" qual:id="sa30"><annotation><rdf:RDF><rdf:Description rdf:about="#s151"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BAD/BBC3/BCL2L11_complex|BID&amp;BAX&amp;!BCL2/MCL1/BCL2L1_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s151" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CASP7" qual:constant="false" qual:id="sa39"><annotation><rdf:RDF><rdf:Description rdf:about="#s117"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CASP9|CASP8&amp;CASP7" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s117" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Apoptosis_phenotype" qual:constant="false" qual:id="sa41"><annotation><rdf:RDF>
artenobot's avatar
artenobot committed
3 4 5
<rdf:Description rdf:about="#s37">
<bqbiol:isDescribedBy>
<rdf:Bag>
artenobot's avatar
artenobot committed
6
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
artenobot's avatar
artenobot committed
7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:mesh:D017209" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CASP7|Orf3b|Orf8a|N|S|Orf9b|Orf6|CASP3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s37" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="M" qual:constant="true" qual:id="sa42"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s38">
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:APO40582" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:M" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s38" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
cylon-x's avatar
cylon-x committed
25
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Orf7a" qual:constant="true" qual:id="sa43"><annotation><rdf:RDF><rdf:Description rdf:about="#s39"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf7a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s39" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="TRADD" qual:constant="true" qual:id="sa44"><annotation><rdf:RDF><rdf:Description rdf:about="#s40"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TRADD" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s40" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Orf3a" qual:constant="true" qual:id="sa48"><annotation><rdf:RDF><rdf:Description rdf:about="#s45"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf3a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s45" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="MAPK14" qual:constant="false" qual:id="sa49"><annotation><rdf:RDF><rdf:Description rdf:about="#s118"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MAPK14&amp;Orf3a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s118" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="E" qual:constant="true" qual:id="sa69"><annotation><rdf:RDF><rdf:Description rdf:about="#s94"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:E" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s94" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Orf3b" qual:constant="true" qual:id="sa72"><annotation><rdf:RDF><rdf:Description rdf:about="#s144"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf3b" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s144" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Orf8a" qual:constant="true" qual:id="sa73"><annotation><rdf:RDF><rdf:Description rdf:about="#s145"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf8a" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s145" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="N" qual:constant="true" qual:id="sa74"><annotation><rdf:RDF><rdf:Description rdf:about="#s146"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:N" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s146" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Orf6" qual:constant="true" qual:id="sa75"><annotation><rdf:RDF><rdf:Description rdf:about="#s147"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf6" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s147" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="S" qual:constant="true" qual:id="sa76"><annotation><rdf:RDF><rdf:Description rdf:about="#s148"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:S" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s148" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Orf9b" qual:constant="true" qual:id="sa77"><annotation><rdf:RDF><rdf:Description rdf:about="#s149"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:Orf9b" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s149" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BAD" qual:constant="false" qual:id="sa78"><annotation><rdf:RDF><rdf:Description rdf:about="#s150"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BAD&amp;!AKT1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s150" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies></qual:listOfQualitativeSpecies><qual:listOfTransitions><qual:transition qual:id="tr_csa3"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa11" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa3_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa3" qual:transitionEffect="assignmentLevel" qual:id="tr_csa3_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>csa11</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re22">
artenobot's avatar
artenobot committed
26 27 28 29 30 31
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
32
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa5"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa25" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa5_in_0" /><qual:input qual:qualitativeSpecies="sa27" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa5_in_1" /><qual:input qual:qualitativeSpecies="sa18" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa5_in_2" /><qual:input qual:qualitativeSpecies="sa28" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_csa5_in_3" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa5" qual:transitionEffect="assignmentLevel" qual:id="tr_csa5_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa25</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa27</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa18</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa28</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re30">
artenobot's avatar
artenobot committed
33 34 35 36 37 38 39 40 41 42 43
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
44
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa6"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa44" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa6_in_0" /><qual:input qual:qualitativeSpecies="sa9" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa6_in_1" /><qual:input qual:qualitativeSpecies="csa1" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa6_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa6" qual:transitionEffect="assignmentLevel" qual:id="tr_csa6_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa44</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa9</ci><cn type="integer">1</cn></apply><apply><eq /><ci>csa1</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re16">
artenobot's avatar
artenobot committed
45 46 47 48 49 50
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
51
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa11"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa43" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa11_in_0" /><qual:input qual:qualitativeSpecies="sa69" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa11_in_1" /><qual:input qual:qualitativeSpecies="sa78" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_csa11_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa11" qual:transitionEffect="assignmentLevel" qual:id="tr_csa11_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><or /><apply><eq /><ci>sa43</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa69</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>sa78</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re23">
artenobot's avatar
artenobot committed
52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:15694340" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
68
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa9"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa9" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa9_in_0" /><qual:input qual:qualitativeSpecies="csa2" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa9_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa9" qual:transitionEffect="assignmentLevel" qual:id="tr_sa9_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa9</ci><cn type="integer">1</cn></apply><apply><eq /><ci>csa2</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re3">
artenobot's avatar
artenobot committed
69 70 71 72 73 74 75 76 77 78 79
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
80
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa13"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa13" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa13_in_0" /><qual:input qual:qualitativeSpecies="csa6" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa13_in_1" /><qual:input qual:qualitativeSpecies="sa9" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa13_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa13" qual:transitionEffect="assignmentLevel" qual:id="tr_sa13_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><or /><apply><eq /><ci>csa6</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa9</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>sa13</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re5">
artenobot's avatar
artenobot committed
81 82 83 84 85 86 87 88 89 90 91
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
92
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa15"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa15" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa15_in_0" /><qual:input qual:qualitativeSpecies="sa13" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa15_in_1" /><qual:input qual:qualitativeSpecies="sa18" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa15_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa15" qual:transitionEffect="assignmentLevel" qual:id="tr_sa15_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><or /><apply><eq /><ci>sa13</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa18</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>sa15</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re6">
artenobot's avatar
artenobot committed
93 94 95 96 97 98 99 100 101 102 103
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
104
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa18"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa18" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa18_in_0" /><qual:input qual:qualitativeSpecies="csa5" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa18_in_1" /><qual:input qual:qualitativeSpecies="sa28" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa18_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa18" qual:transitionEffect="assignmentLevel" qual:id="tr_sa18_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa18</ci><cn type="integer">1</cn></apply><apply><eq /><ci>csa5</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa28</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re7">
artenobot's avatar
artenobot committed
105 106 107 108 109 110 111 112 113 114 115
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
116
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa22"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa22" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa22_in_0" /><qual:input qual:qualitativeSpecies="sa13" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa22_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa22" qual:transitionEffect="assignmentLevel" qual:id="tr_sa22_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa22</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa13</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re8">
artenobot's avatar
artenobot committed
117 118 119 120 121 122 123 124 125 126 127
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
128
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa25"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa49" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa25_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa25" qual:transitionEffect="assignmentLevel" qual:id="tr_sa25_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>sa49</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re10">
artenobot's avatar
artenobot committed
129 130 131 132 133 134 135 136 137 138 139
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
140
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa28"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa28" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa28_in_0" /><qual:input qual:qualitativeSpecies="sa42" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa28_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa28" qual:transitionEffect="assignmentLevel" qual:id="tr_sa28_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa28</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa42</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re15">
artenobot's avatar
artenobot committed
141 142 143 144 145 146 147 148 149 150 151
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
152
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa30"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa30" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa30_in_0" /><qual:input qual:qualitativeSpecies="csa3" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa30_in_1" /><qual:input qual:qualitativeSpecies="csa11" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa30_in_2" /><qual:input qual:qualitativeSpecies="sa22" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa30_in_3" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa30" qual:transitionEffect="assignmentLevel" qual:id="tr_sa30_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><or /><apply><eq /><ci>csa3</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa22</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>sa30</ci><cn type="integer">1</cn></apply><apply><eq /><ci>csa11</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re9">
artenobot's avatar
artenobot committed
153 154 155 156 157 158 159 160 161 162 163
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
164
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa39"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa39" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa39_in_0" /><qual:input qual:qualitativeSpecies="sa18" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa39_in_1" /><qual:input qual:qualitativeSpecies="sa13" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa39_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa39" qual:transitionEffect="assignmentLevel" qual:id="tr_sa39_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><or /><apply><eq /><ci>sa18</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa13</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>sa39</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re12">
artenobot's avatar
artenobot committed
165 166 167 168 169 170 171 172 173 174 175
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
176
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa41"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa39" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_0" /><qual:input qual:qualitativeSpecies="sa72" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_1" /><qual:input qual:qualitativeSpecies="sa73" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_2" /><qual:input qual:qualitativeSpecies="sa74" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_3" /><qual:input qual:qualitativeSpecies="sa76" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_4" /><qual:input qual:qualitativeSpecies="sa77" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_5" /><qual:input qual:qualitativeSpecies="sa75" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_6" /><qual:input qual:qualitativeSpecies="sa15" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa41_in_7" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa41" qual:transitionEffect="assignmentLevel" qual:id="tr_sa41_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><or /><apply><eq /><ci>sa39</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa72</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa73</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa74</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa76</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa77</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa75</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa15</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re14">
artenobot's avatar
artenobot committed
177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re27">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re28">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re29">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re31">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re32">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re33">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re35">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
272
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa49"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa49" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa49_in_0" /><qual:input qual:qualitativeSpecies="sa48" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa49_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa49" qual:transitionEffect="assignmentLevel" qual:id="tr_sa49_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa49</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa48</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re19">
artenobot's avatar
artenobot committed
273 274 275 276 277 278 279 280 281 282 283
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:31226023" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:taxonomy:227984" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
284
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa78"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa78" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa78_in_0" /><qual:input qual:qualitativeSpecies="sa28" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa78_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa78" qual:transitionEffect="assignmentLevel" qual:id="tr_sa78_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa78</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa28</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><notes><html xmlns="http://www.w3.org/1999/xhtml"><head><title /></head><body><p>Signor 
artenobot's avatar
artenobot committed
285 286 287 288 289 290 291 292 293 294 295 296 297 298
</p>
</body></html></notes><annotation><rdf:RDF><rdf:Description rdf:about="#re34">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:15694340" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.pathway:hsa04210" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition></qual:listOfTransitions></model></sbml>