E_protein_stable.sbml 49.3 KB
Newer Older
artenobot's avatar
artenobot committed
1
<?xml version='1.0' encoding='utf-8'?>
cylon-x's avatar
cylon-x committed
2
3
4
5
6
7
8
9
10
11
<sbml xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" level="3" version="1" layout:required="false" xmlns="http://www.sbml.org/sbml/level3/version1/core" qual:required="true" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:qual="http://www.sbml.org/sbml/level3/version1/qual/version1"><model id="model_id"><listOfCompartments><compartment constant="true" id="comp1" /></listOfCompartments><layout:listOfLayouts><layout:layout id="layout1"><layout:dimensions width="3500" height="1600" /><layout:listOfAdditionalGraphicalObjects><layout:generalGlyph layout:reference="csa1" layout:id="csa1_glyph"><layout:boundingBox><layout:position layout:x="1458.7759740259744" layout:y="434.1428571428569" /><layout:dimensions layout:height="200.0" layout:width="184.5" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa2" layout:id="csa2_glyph"><layout:boundingBox><layout:position layout:x="1176.7759740259744" layout:y="435.1428571428569" /><layout:dimensions layout:height="200.0" layout:width="184.5" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa7" layout:id="csa7_glyph"><layout:boundingBox><layout:position layout:x="747.5" layout:y="1214.5" /><layout:dimensions layout:height="86.0" layout:width="272.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa4" layout:id="csa4_glyph"><layout:boundingBox><layout:position layout:x="2129.5259740259744" layout:y="1187.1428571428573" /><layout:dimensions layout:height="147.0" layout:width="170.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa10" layout:id="csa10_glyph"><layout:boundingBox><layout:position layout:x="2846.5" layout:y="1168.0" /><layout:dimensions layout:height="220.0" layout:width="202.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa3" layout:id="csa3_glyph"><layout:boundingBox><layout:position layout:x="567.5" layout:y="1032.5" /><layout:dimensions layout:height="120.0" layout:width="100.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="csa8" layout:id="csa8_glyph"><layout:boundingBox><layout:position layout:x="1799.4740259740256" layout:y="283.3571428571431" /><layout:dimensions layout:height="120.0" layout:width="100.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa1" layout:id="sa1_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="384.32653061224164" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa2" layout:id="sa2_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="427.5510204081611" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa3" layout:id="sa3_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="342.673469387757" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa5" layout:id="sa5_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="557.2244897959195" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa6" layout:id="sa6_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="643.673469387757" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa7" layout:id="sa7_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="600.4489795918389" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa8" layout:id="sa8_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="470.77551020408055" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa9" layout:id="sa9_glyph"><layout:boundingBox><layout:position layout:x="935.0" layout:y="514.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa10" layout:id="sa10_glyph"><layout:boundingBox><layout:position layout:x="1450.0" layout:y="300.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa11" layout:id="sa11_glyph"><layout:boundingBox><layout:position layout:x="1461.0" layout:y="351.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa12" layout:id="sa12_glyph"><layout:boundingBox><layout:position layout:x="1231.0259740259744" layout:y="234.14285714285688" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa13" layout:id="sa13_glyph"><layout:boundingBox><layout:position layout:x="1299.0259740259744" layout:y="163.14285714285688" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa17" layout:id="sa17_glyph"><layout:boundingBox><layout:position layout:x="1590.0" layout:y="775.0" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa20" layout:id="sa20_glyph"><layout:boundingBox><layout:position layout:x="1203.5259740259744" layout:y="716.1428571428569" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa22" layout:id="sa22_glyph"><layout:boundingBox><layout:position layout:x="2397.5" layout:y="1077.5" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa24" layout:id="sa24_glyph"><layout:boundingBox><layout:position layout:x="1982.5259740259744" layout:y="1234.1428571428573" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa25" layout:id="sa25_glyph"><layout:boundingBox><layout:position layout:x="1858.071428571429" layout:y="1221.3246753246754" /><layout:dimensions layout:height="52.0" layout:width="92.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa26" layout:id="sa26_glyph"><layout:boundingBox><layout:position layout:x="1710.0259740259744" layout:y="1289.6428571428573" /><layout:dimensions layout:height="25.0" layout:width="25.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa28" layout:id="sa28_glyph"><layout:boundingBox><layout:position layout:x="89.0714285714289" layout:y="1232.9610389610389" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa29" layout:id="sa29_glyph"><layout:boundingBox><layout:position layout:x="183.0714285714289" layout:y="1232.9610389610389" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa30" layout:id="sa30_glyph"><layout:boundingBox><layout:position layout:x="280.0714285714289" layout:y="1234.9610389610389" /><layout:dimensions layout:height="40.0" layout:width="80.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa66" layout:id="sa66_glyph"><layout:boundingBox><layout:position layout:x="3230.0" layout:y="1110.0" /><layout:dimensions layout:height="25.0" layout:width="25.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa67" layout:id="sa67_glyph"><layout:boundingBox><layout:position layout:x="3113.0" layout:y="1468.0" /><layout:dimensions layout:height="25.0" layout:width="25.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa73" layout:id="sa73_glyph"><layout:boundingBox><layout:position layout:x="2322.5" layout:y="1432.5" /><layout:dimensions layout:height="100.0" layout:width="570.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa74" layout:id="sa74_glyph"><layout:boundingBox><layout:position layout:x="703.5" layout:y="1399.5" /><layout:dimensions layout:height="96.0" layout:width="498.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa77" layout:id="sa77_glyph"><layout:boundingBox><layout:position layout:x="1780.0" layout:y="455.0" /><layout:dimensions layout:height="50.0" layout:width="330.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa78" layout:id="sa78_glyph"><layout:boundingBox><layout:position layout:x="1585.0" layout:y="680.0" /><layout:dimensions layout:height="50.0" layout:width="200.0" /></layout:boundingBox></layout:generalGlyph><layout:generalGlyph layout:reference="sa79" layout:id="sa79_glyph"><layout:boundingBox><layout:position layout:x="1235.0" layout:y="678.5" /><layout:dimensions layout:height="25.0" layout:width="70.0" /></layout:boundingBox></layout:generalGlyph></layout:listOfAdditionalGraphicalObjects></layout:layout></layout:listOfLayouts><qual:listOfQualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="histone_complex_Nucleus" qual:constant="false" qual:id="csa1"><annotation><rdf:RDF><rdf:Description rdf:about="#s44"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BRD4|BRD2&amp;histone_complex_Nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s44" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="histone_complex_Nucleus" qual:constant="false" qual:id="csa2"><annotation><rdf:RDF><rdf:Description rdf:about="#s194"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H4C14&amp;H4-16&amp;H4C1&amp;H3C15&amp;H3C1&amp;H4C9&amp;H2BC21&amp;H2A" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s194" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CRB3:PALS1:PATJ complex_complex" qual:constant="false" qual:id="csa7"><annotation><rdf:RDF><rdf:Description rdf:about="#s182"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MPP5&amp;CRB3&amp;PATJ" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s182" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ASIC1 trimer:H+:STOML3_complex" qual:constant="false" qual:id="csa4"><annotation><rdf:RDF><rdf:Description rdf:about="#s317"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ASIC1&amp;STOML3&amp;!E_Cytoplasm" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s317" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ATP1A:ATP1B:FXYDs_complex" qual:constant="false" qual:id="csa10"><annotation><rdf:RDF><rdf:Description rdf:about="#s329"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:!E_Cytoplasm" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s329" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="E-PALS1_complex" qual:constant="false" qual:id="csa3"><annotation><rdf:RDF><rdf:Description rdf:about="#s218"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MPP5&amp;E_Cytoplasm" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s218" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="P-TEFb_complex" qual:constant="false" qual:id="csa8"><annotation><rdf:RDF><rdf:Description rdf:about="#s267"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CDK9&amp;BRD4|CCNT1&amp;BRD4" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s267" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H3C1" qual:constant="true" qual:id="sa1"><annotation><rdf:RDF><rdf:Description rdf:about="#s79"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H3C1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s79" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H4C1" qual:constant="true" qual:id="sa2"><annotation><rdf:RDF><rdf:Description rdf:about="#s76"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H4C1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s76" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H3C15" qual:constant="true" qual:id="sa3"><annotation><rdf:RDF><rdf:Description rdf:about="#s75"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H3C15" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s75" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H4C9" qual:constant="true" qual:id="sa5"><annotation><rdf:RDF><rdf:Description rdf:about="#s87"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H4C9" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s87" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H2A" qual:constant="true" qual:id="sa6"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s88">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:interpro:IPR002119" />
</rdf:Bag>
</bqmodel:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H2A" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s88" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H2BC21" qual:constant="true" qual:id="sa7"><annotation><rdf:RDF><rdf:Description rdf:about="#s86"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H2BC21" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s86" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H4-16" qual:constant="true" qual:id="sa8"><annotation><rdf:RDF><rdf:Description rdf:about="#s78"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H4-16" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s78" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H4C14" qual:constant="true" qual:id="sa9"><annotation><rdf:RDF><rdf:Description rdf:about="#s77"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H4C14" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s77" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CDK9" qual:constant="true" qual:id="sa10"><annotation><rdf:RDF><rdf:Description rdf:about="#s74"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CDK9" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s74" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CCNT1" qual:constant="true" qual:id="sa11"><annotation><rdf:RDF><rdf:Description rdf:about="#s90"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CCNT1" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s90" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BRD4" qual:constant="false" qual:id="sa12"><annotation><rdf:RDF><rdf:Description rdf:about="#s91"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BRD4&amp;!E_Nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s91" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="E_Nucleus" qual:constant="true" qual:id="sa13"><annotation><rdf:RDF>
artenobot's avatar
artenobot committed
12
13
14
15
16
17
18
19
20
21
22
<rdf:Description rdf:about="#s92">
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
cylon-x's avatar
cylon-x committed
23
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:E_Nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s92" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
artenobot's avatar
artenobot committed
24
</rdf:RDF>
cylon-x's avatar
cylon-x committed
25
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="TBP" qual:constant="false" qual:id="sa17"><annotation><rdf:RDF><rdf:Description rdf:about="#s82"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:TBP&amp;BRD2" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s82" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="BRD2" qual:constant="false" qual:id="sa20"><annotation><rdf:RDF><rdf:Description rdf:about="#s93"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:BRD2&amp;!JQ-1_simple_molecule&amp;!E_Nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s93" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="E_Cytoplasm" qual:constant="true" qual:id="sa22"><annotation><rdf:RDF>
artenobot's avatar
artenobot committed
26
27
28
29
30
31
32
33
34
35
36
<rdf:Description rdf:about="#s59">
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbiprotein:BCD58755" />
</rdf:Bag>
</bqbiol:isEncodedBy>
cylon-x's avatar
cylon-x committed
37
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:E_Cytoplasm" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s59" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
artenobot's avatar
artenobot committed
38
</rdf:RDF>
cylon-x's avatar
cylon-x committed
39
40
41
42
43
44
45
46
47
48
</annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="STOML3" qual:constant="true" qual:id="sa24"><annotation><rdf:RDF><rdf:Description rdf:about="#s54"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:STOML3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s54" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="ASIC1" qual:constant="false" qual:id="sa25"><annotation><rdf:RDF><rdf:Description rdf:about="#s258"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H+_ion" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s258" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="H+_ion" qual:constant="true" qual:id="sa26"><annotation><rdf:RDF><rdf:Description rdf:about="#s23"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:H+_ion" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s23" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="PATJ" qual:constant="false" qual:id="sa28"><annotation><rdf:RDF><rdf:Description rdf:about="#s298"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:PATJ" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s298" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="CRB3" qual:constant="false" qual:id="sa29"><annotation><rdf:RDF><rdf:Description rdf:about="#s297"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CRB3" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s297" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="MPP5" qual:constant="false" qual:id="sa30"><annotation><rdf:RDF><rdf:Description rdf:about="#s296"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:MPP5" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s296" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="K+_ion" qual:constant="false" qual:id="sa66"><annotation><rdf:RDF><rdf:Description rdf:about="#s286"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATP1A:ATP1B:FXYDs_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s286" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Na+_ion" qual:constant="false" qual:id="sa67"><annotation><rdf:RDF><rdf:Description rdf:about="#s291"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATP1A:ATP1B:FXYDs_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s291" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Activity of sodium channels_phenotype" qual:constant="false" qual:id="sa73"><annotation><rdf:RDF><rdf:Description rdf:about="#s37"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:ATP1A:ATP1B:FXYDs_complex|!STOML3|ASIC1 trimer:H+:STOML3_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s37" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Maintenance of tight junction_phenotype" qual:constant="false" qual:id="sa74"><annotation><rdf:RDF><rdf:Description rdf:about="#s53"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:CRB3:PALS1:PATJ complex_complex|E-PALS1_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s53" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="RNA Polymerase II-dependent Transcription _phenotype" qual:constant="false" qual:id="sa77"><annotation><rdf:RDF><rdf:Description rdf:about="#s270"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:P-TEFb_complex" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s270" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="Chromatin organization_phenotype" qual:constant="false" qual:id="sa78"><annotation><rdf:RDF><rdf:Description rdf:about="#s271"><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:histone_complex_Nucleus" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s271" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description></rdf:RDF></annotation></qual:qualitativeSpecies><qual:qualitativeSpecies qual:maxLevel="1" qual:compartment="comp1" qual:name="JQ-1_simple_molecule" qual:constant="true" qual:id="sa79"><annotation><rdf:RDF>
<rdf:Description rdf:about="#s299">
<bqbiol:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubchem.compound:46907787" />
</rdf:Bag>
</bqbiol:is>
<bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:function:JQ-1_simple_molecule" /></rdf:Bag></bqbiol:isDescribedBy><bqbiol:isDescribedBy><rdf:Bag><rdf:li rdf:resource="urn:casq:cdid:s299" /></rdf:Bag></bqbiol:isDescribedBy></rdf:Description>
</rdf:RDF>
</annotation></qual:qualitativeSpecies></qual:listOfQualitativeSpecies><qual:listOfTransitions><qual:transition qual:id="tr_csa1"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa2" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_0" /><qual:input qual:qualitativeSpecies="sa12" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_1" /><qual:input qual:qualitativeSpecies="sa20" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa1_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa1" qual:transitionEffect="assignmentLevel" qual:id="tr_csa1_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><or /><apply><eq /><ci>sa12</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa20</ci><cn type="integer">1</cn></apply></apply><apply><eq /><ci>csa2</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re15">
artenobot's avatar
artenobot committed
49
50
51
52
53
54
55
56
57
58
59
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1038%2Fnsmb.3228." />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1016%2Fj.molcel.2008.01.018" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
60
61
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa2"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa9" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_0" /><qual:input qual:qualitativeSpecies="sa8" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_1" /><qual:input qual:qualitativeSpecies="sa2" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_2" /><qual:input qual:qualitativeSpecies="sa3" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_3" /><qual:input qual:qualitativeSpecies="sa1" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_4" /><qual:input qual:qualitativeSpecies="sa5" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_5" /><qual:input qual:qualitativeSpecies="sa7" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_6" /><qual:input qual:qualitativeSpecies="sa6" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa2_in_7" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa2" qual:transitionEffect="assignmentLevel" qual:id="tr_csa2_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa9</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa8</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa2</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa3</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa1</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa5</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa7</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa6</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re20">
<bqbiol:isDescribedBy>
artenobot's avatar
artenobot committed
62
<rdf:Bag>
cylon-x's avatar
cylon-x committed
63
<rdf:li rdf:resource="urn:miriam:doi:10.1016%2Fj.molcel.2008.01.018" />
artenobot's avatar
artenobot committed
64
</rdf:Bag>
cylon-x's avatar
cylon-x committed
65
</bqbiol:isDescribedBy>
artenobot's avatar
artenobot committed
66
</rdf:Description>
cylon-x's avatar
cylon-x committed
67
68
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa7"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa30" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa7_in_0" /><qual:input qual:qualitativeSpecies="sa29" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa7_in_1" /><qual:input qual:qualitativeSpecies="sa28" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa7_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa7" qual:transitionEffect="assignmentLevel" qual:id="tr_csa7_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa30</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa29</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa28</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00069">
<bqbiol:isDescribedBy>
artenobot's avatar
artenobot committed
69
<rdf:Bag>
cylon-x's avatar
cylon-x committed
70
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
artenobot's avatar
artenobot committed
71
</rdf:Bag>
cylon-x's avatar
cylon-x committed
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa4"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa25" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa4_in_0" /><qual:input qual:qualitativeSpecies="sa24" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa4_in_1" /><qual:input qual:qualitativeSpecies="sa22" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_csa4_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa4" qual:transitionEffect="assignmentLevel" qual:id="tr_csa4_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa25</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa24</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa22</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re18">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa10"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa22" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_csa10_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa10" qual:transitionEffect="assignmentLevel" qual:id="tr_csa10_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>sa22</ci><cn type="integer">0</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00050">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
artenobot's avatar
artenobot committed
87
</rdf:Description>
cylon-x's avatar
cylon-x committed
88
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa3"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa30" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa3_in_0" /><qual:input qual:qualitativeSpecies="sa22" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa3_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa3" qual:transitionEffect="assignmentLevel" qual:id="tr_csa3_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa30</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa22</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re37">
cylon-x's avatar
cylon-x committed
89
<bqbiol:isDescribedBy>
artenobot's avatar
artenobot committed
90
<rdf:Bag>
cylon-x's avatar
cylon-x committed
91
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
artenobot's avatar
artenobot committed
92
</rdf:Bag>
cylon-x's avatar
cylon-x committed
93
94
95
96
97
98
99
100
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_csa8"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa10" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa8_in_0" /><qual:input qual:qualitativeSpecies="sa12" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa8_in_1" /><qual:input qual:qualitativeSpecies="sa11" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_csa8_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="csa8" qual:transitionEffect="assignmentLevel" qual:id="tr_csa8_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><or /><apply><and /><apply><eq /><ci>sa10</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa12</ci><cn type="integer">1</cn></apply></apply><apply><and /><apply><eq /><ci>sa11</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa12</ci><cn type="integer">1</cn></apply></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re28">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1038%2Femboj.2008.121" />
</rdf:Bag>
</bqbiol:isDescribedBy>
artenobot's avatar
artenobot committed
101
</rdf:Description>
cylon-x's avatar
cylon-x committed
102
<rdf:Description rdf:about="#re12">
artenobot's avatar
artenobot committed
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
<bqbiol:isEncodedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.18632%2Foncotarget.18583" />
</rdf:Bag>
</bqbiol:isEncodedBy>
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1016%2Fj.molcel.2005.06.027" />
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
<rdf:Description rdf:about="#re13">
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1016%2Fj.molcel.2005.06.027" />
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
cylon-x's avatar
cylon-x committed
121
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa12"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa12" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa12_in_0" /><qual:input qual:qualitativeSpecies="sa13" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa12_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa12" qual:transitionEffect="assignmentLevel" qual:id="tr_sa12_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa12</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa13</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re16">
artenobot's avatar
artenobot committed
122
123
124
125
126
127
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1038%2Fs41586-020-2286-9" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
128
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa17"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa17" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa17_in_0" /><qual:input qual:qualitativeSpecies="sa20" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa17_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa17" qual:transitionEffect="assignmentLevel" qual:id="tr_sa17_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa17</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa20</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re31">
artenobot's avatar
artenobot committed
129
130
131
132
133
134
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1007%2Fs11010-006-9223-6" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
135
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa20"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa20" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa20_in_0" /><qual:input qual:qualitativeSpecies="sa79" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa20_in_1" /><qual:input qual:qualitativeSpecies="sa13" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa20_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa20" qual:transitionEffect="assignmentLevel" qual:id="tr_sa20_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><and /><apply><eq /><ci>sa20</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa79</ci><cn type="integer">0</cn></apply><apply><eq /><ci>sa13</ci><cn type="integer">0</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re29">
artenobot's avatar
artenobot committed
136
137
138
139
140
141
142
143
144
145
146
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1038%2Fs41586-020-2286-9" />
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1080%2F15592294.2018.1469891" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
cylon-x's avatar
cylon-x committed
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa25"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa26" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa25_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa25" qual:transitionEffect="assignmentLevel" qual:id="tr_sa25_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>sa26</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re17">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa28"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa28" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa28_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa28" qual:transitionEffect="assignmentLevel" qual:id="tr_sa28_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>sa28</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00047">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa29"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa29" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa29_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa29" qual:transitionEffect="assignmentLevel" qual:id="tr_sa29_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>sa29</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re14">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa30"><qual:listOfInputs><qual:input qual:qualitativeSpecies="sa30" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa30_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa30" qual:transitionEffect="assignmentLevel" qual:id="tr_sa30_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>sa30</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00042">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa66"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa10" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa66_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa66" qual:transitionEffect="assignmentLevel" qual:id="tr_sa66_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>csa10</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re19">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa67"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa10" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa67_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa67" qual:transitionEffect="assignmentLevel" qual:id="tr_sa67_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>csa10</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00063">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa73"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa10" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa73_in_0" /><qual:input qual:qualitativeSpecies="sa24" qual:transitionEffect="none" qual:sign="negative" qual:id="tr_sa73_in_1" /><qual:input qual:qualitativeSpecies="csa4" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa73_in_2" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa73" qual:transitionEffect="assignmentLevel" qual:id="tr_sa73_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><or /><apply><eq /><ci>csa10</ci><cn type="integer">1</cn></apply><apply><eq /><ci>sa24</ci><cn type="integer">0</cn></apply><apply><eq /><ci>csa4</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re34">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re35">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re36">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21524776" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa74"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa7" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa74_in_0" /><qual:input qual:qualitativeSpecies="csa3" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa74_in_1" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa74" qual:transitionEffect="assignmentLevel" qual:id="tr_sa74_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><or /><apply><eq /><ci>csa7</ci><cn type="integer">1</cn></apply><apply><eq /><ci>csa3</ci><cn type="integer">1</cn></apply></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00074">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
<rdf:Description rdf:about="#re33">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:20861307" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa77"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa8" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa77_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa77" qual:transitionEffect="assignmentLevel" qual:id="tr_sa77_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>csa8</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#CDMT00035">
artenobot's avatar
artenobot committed
225
226
227
228
229
230
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:doi:10.1038%2Femboj.2008.121" />
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
cylon-x's avatar
cylon-x committed
231
232
233
234
235
236
237
238
</rdf:RDF></annotation></qual:transition><qual:transition qual:id="tr_sa78"><qual:listOfInputs><qual:input qual:qualitativeSpecies="csa1" qual:transitionEffect="none" qual:sign="positive" qual:id="tr_sa78_in_0" /></qual:listOfInputs><qual:listOfOutputs><qual:output qual:qualitativeSpecies="sa78" qual:transitionEffect="assignmentLevel" qual:id="tr_sa78_out" /></qual:listOfOutputs><qual:listOfFunctionTerms><qual:defaultTerm qual:resultLevel="0" /><qual:functionTerm qual:resultLevel="1"><math xmlns="http://www.w3.org/1998/Math/MathML"><apply><eq /><ci>csa1</ci><cn type="integer">1</cn></apply></math></qual:functionTerm></qual:listOfFunctionTerms><annotation><rdf:RDF><rdf:Description rdf:about="#re30">
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:18406326" />
</rdf:Bag>
</bqbiol:isDescribedBy>
</rdf:Description>
</rdf:RDF></annotation></qual:transition></qual:listOfTransitions></model></sbml>