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Computational modelling and simulation
pb4covid19
Commits
df4e6cb9
Commit
df4e6cb9
authored
Oct 26, 2020
by
Vincent Noël
Browse files
Bugfixes in interface
parent
f7dbd852
Changes
5
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bin/substrates.py
View file @
df4e6cb9
...
...
@@ -983,7 +983,6 @@ class SubstrateTab(object):
else
:
if
self
.
color_physiboss
and
self
.
color_physiboss_node
is
not
None
and
self
.
color_physiboss_node
[
0
]
!=
'<'
:
if
int
(
child
.
attrib
[
'id'
][
4
:])
in
states_dict
.
keys
():
if
self
.
color_physiboss_node
in
states_dict
[
int
(
child
.
attrib
[
'id'
][
4
:])]:
rgb
=
[
0
,
0.5
,
0
]
...
...
data/PhysiCell_settings.xml
View file @
df4e6cb9
...
...
@@ -113,7 +113,7 @@
</full_data>
<SVG>
<interval
units=
"min"
>
1
5
</interval>
<interval
units=
"min"
>
5
</interval>
<enable>
true
</enable>
</SVG>
...
...
data/create_cell_types_flat.py
0 → 100644
View file @
df4e6cb9
This diff is collapsed.
Click to expand it.
data/initial.xml
View file @
df4e6cb9
...
...
@@ -11,9 +11,9 @@
</software>
<citation
/>
<current_time
units=
"min"
>
0.000000
</current_time>
<current_runtime
units=
"sec"
>
0.13
3552
</current_runtime>
<created>
2020-10-2
3
T1
6
:2
0
:5
5
Z
</created>
<last_modified>
2020-10-2
3
T1
6
:2
0
:5
5
Z
</last_modified>
<current_runtime
units=
"sec"
>
0.13
7806
</current_runtime>
<created>
2020-10-2
6
T1
0
:2
1
:5
2
Z
</created>
<last_modified>
2020-10-2
6
T1
0
:2
1
:5
2
Z
</last_modified>
</metadata>
<microenvironment>
<domain
name=
"microenvironment"
>
...
...
pc4covid19.ipynb
View file @
df4e6cb9
%% Cell type:code id: tags:
```
python
from
IPython.core.display
import
display
,
HTML
display
(
HTML
(
"<style>.container { width:100% !important; }</style>"
))
%
matplotlib
inline
```
%%%% Output: display_data
%% Cell type:code id: tags:
```
python
import
sys
,
os
sys
.
path
.
insert
(
0
,
os
.
path
.
abspath
(
'bin'
))
import
pc4covid19
```
%%%% Output: display_data
%% Cell type:code id: tags:
```
python
pc4covid19
.
gui
```
%%%% Output: display_data
%% Cell type:code id: tags:
```
python
#from debug import debug_view
#debug_view
```
...
...
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