Unverified Commit ceaac7c0 authored by Randy Heiland's avatar Randy Heiland Committed by GitHub
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Update about.html

parent 6a6d6d0d
......@@ -26,6 +26,18 @@ Black cells are apoptotic (dead from viral load).
</ul>
<h3 style="color: red; font-weight: strong">Caveats and disclaimers</h3>
<strong>This model is under active development using rapid prototyping:</strong>
<ul>
<li>It has not been peer reviewed. </li>
<li>It is intended to drive basic scientific research and public education at this stage.</li>
<li><strong>It cannot be used for public policy decisions. </strong></li>
<li><strong>It cannot be used for individual medical decisions.</strong></li>
</ul>
<p><strong>
This model will be continually refined with input from the community, particularly experts in infectious diseases. The validation state will be updated as this progresses.</strong></p>
<h2 id="GUI_overview"><strong>GUI Overview</strong></h2>
<ul>
......@@ -33,6 +45,7 @@ Black cells are apoptotic (dead from viral load).
<li><b>Microenvironment</b> tab:&nbsp;&nbsp; microenvironment parameters that are model-specific</li>
<li><b>User Params</b> tab:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; user parameters that are model-specific</li>
<li><b>Out: Plots</b> tab:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; output display of cells and substrates</li>
<li><b>Animate</b> tab:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; generate an animation of cells</li>
</ul>
Clicking the 'Run' button will use the specified parameters and start a simulation. When clicked, it creates an "Output" widget
that can be clicked/expanded to reveal the progress of the simulation. When the simulation generates output files,
......@@ -66,7 +79,7 @@ Note that as the simulation runs, the &quot;# cell frames&quot; field will incre
<p>If there are multiple substrates defined in the Microenvironment, you can select a different one from the drop-down widget in the Plots tab. You can also fix the colormap range of values.</p>
<p>Note that you can download full simulation data for further exploration in your tools of choice.</p>
<p>Note that you can download full simulation data for further exploration in your tools of choice. And you can also generate an animation of the cells to play in the browser and, optionally, download as a video.</p>
<h3><strong>About the software: </strong></h3>
<p>
......@@ -79,3 +92,4 @@ This model and cloud-hosted demo are part of the education and outreach for the
<a href="https://joss.theoj.org/papers/10.21105/joss.01408">R. Heiland, D. Mishler, T. Zhang, E. Bower, and P. Macklin. xml2jupyter: Mapping parameters between XML and Jupyter widgets. Journal of Open Source Software 4(39):1408, 2019. DOI: 10.21105/joss.01408.
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</ol>
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