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Commit 4a93c8cb authored by Vincent Noël's avatar Vincent Noël
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Updated model

parent a287908d
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bin/cell_types.py
View file @ 4a93c8cb
......@@ -815,6 +815,16 @@ class CellTypesTab(object):
row = [name_btn, self.float75, units_btn, description_btn]
box81 = Box(children=row, layout=box_layout)
name_btn = Button(description='virus_expression_threshold', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float76 = FloatText(value='10.0', step='1', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
description_btn = Button(description='minimal quantity of virus to activate virus_expression node', disabled=True, layout=desc_button_layout)
description_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float76, units_btn, description_btn]
box82 = Box(children=row, layout=box_layout)
self.cell_def_vbox0 = VBox([
div_row1, box0, box1, box2, box3, div_row2, death_model1,box4, box5, box6, box7, box8, box9, box10, death_model2,box11, box12, box13, box14, box15, box16, box17, div_row3, box18, box19, box20, box21, box22, box23, box24, box25, box26, div_row4, box27, box28, box29, box30, box31, div_row5, box32,box33,box34,self.bool2,self.bool3,chemotaxis_btn,self.bool4,box35,box36,div_row6, box37,box38,box39,box40,box41,box42,box43,box44,div_row7, div_row8, box45,
......@@ -854,6 +864,7 @@ class CellTypesTab(object):
box79,
box80,
box81,
box82,
])
# ------------------------------------------
self.cell_def_vboxes.append(self.cell_def_vbox0)
......@@ -865,12 +876,12 @@ class CellTypesTab(object):
death_model1 = Button(description='model: apoptosis', disabled=True, layout={'width':'30%'})
death_model1.style.button_color = '#ffde6b'
name_btn = Button(description='death rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float76 = FloatText(value='0', step='0.01', style=style, layout=widget_layout)
name_btn.style.button_color = 'tan'
self.float77 = FloatText(value='0', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float76, units_btn, ]
box82 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float77, units_btn, ]
box83 = Box(children=row, layout=box_layout)
# -------------------------
div_row10 = Button(description='phenotype:motility', disabled=True, layout=divider_button_layout)
......@@ -883,27 +894,27 @@ class CellTypesTab(object):
div_row12 = Button(description='phenotype:intracellular (maboss)', disabled=True, layout=divider_button_layout)
div_row12.style.button_color = 'orange'
bnd_filename = Button(description='bnd_filename', disabled=True, layout=name_button_layout)
bnd_filename.style.button_color = 'tan'
bnd_filename.style.button_color = 'lightgreen'
self.bnd_filenames[1] = Text(value='../data/boolean_network/epithelial_cell.bnd', style=style, layout=widget_layout)
row = [bnd_filename, self.bnd_filenames[1]]
box83 = Box(children=row, layout=box_layout)
box84 = Box(children=row, layout=box_layout)
cfg_filename = Button(description='cfg_filename', disabled=True, layout=name_button_layout)
cfg_filename.style.button_color = 'lightgreen'
cfg_filename.style.button_color = 'tan'
self.cfg_filenames[1] = Text(value='../data/boolean_network/epithelial_cell.cfg', style=style, layout=widget_layout)
row = [cfg_filename, self.cfg_filenames[1]]
box84 = Box(children=row, layout=box_layout)
box85 = Box(children=row, layout=box_layout)
time_step = Button(description='time_step', disabled=True, layout=name_button_layout)
time_step.style.button_color = 'tan'
self.float77 = FloatText(value='12', style=style, layout=widget_layout)
time_step.style.button_color = 'lightgreen'
self.float78 = FloatText(value='12', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [time_step, self.float77, units_btn]
box85 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'tan'
row = [time_step, self.float78, units_btn]
box86 = Box(children=row, layout=box_layout)
# ================== <custom_data>, if present ==================
self.cell_def_vbox1 = VBox([
div_row9, death_model1,box82, div_row10, self.bool5,div_row11, div_row12, box83,box84,box85, ])
div_row9, death_model1,box83, div_row10, self.bool5,div_row11, div_row12, box84,box85,box86, ])
# ------------------------------------------
self.cell_def_vboxes.append(self.cell_def_vbox1)
......@@ -912,61 +923,61 @@ class CellTypesTab(object):
div_row13 = Button(description='phenotype:mechanics', disabled=True, layout=divider_button_layout)
div_row13.style.button_color = 'orange'
name_btn = Button(description='cell_cell_adhesion_strength', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float78 = FloatText(value='0', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
time_step = [name_btn, self.float78, units_btn, ]
box86 = Box(children=time_step, layout=box_layout)
name_btn = Button(description='cell_cell_repulsion_strength', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float79 = FloatText(value='10', step='1', style=style, layout=widget_layout)
self.float79 = FloatText(value='0', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
time_step = [name_btn, self.float79, units_btn, ]
box87 = Box(children=time_step, layout=box_layout)
name_btn = Button(description='cell_cell_repulsion_strength', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float80 = FloatText(value='10', step='1', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
time_step = [name_btn, self.float80, units_btn, ]
box88 = Box(children=time_step, layout=box_layout)
# -------------------------
div_row14 = Button(description='phenotype:death', disabled=True, layout=divider_button_layout)
div_row14.style.button_color = 'orange'
death_model1 = Button(description='model: apoptosis', disabled=True, layout={'width':'30%'})
death_model1.style.button_color = '#ffde6b'
name_btn = Button(description='death rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float80 = FloatText(value='5e-4', step='0.0001', style=style, layout=widget_layout)
name_btn.style.button_color = 'tan'
self.float81 = FloatText(value='5e-4', step='0.0001', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
time_step = [name_btn, self.float80, units_btn, ]
box88 = Box(children=time_step, layout=box_layout)
units_btn.style.button_color = 'tan'
time_step = [name_btn, self.float81, units_btn, ]
box89 = Box(children=time_step, layout=box_layout)
# -------------------------
div_row15 = Button(description='phenotype:motility', disabled=True, layout=divider_button_layout)
div_row15.style.button_color = 'orange'
name_btn = Button(description='speed', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float81 = FloatText(value='4', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='micron/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float81, units_btn]
box89 = Box(children=row, layout=box_layout)
name_btn = Button(description='persistence_time', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float82 = FloatText(value='5', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
self.float82 = FloatText(value='4', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='micron/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float82, units_btn]
box90 = Box(children=row, layout=box_layout)
name_btn = Button(description='migration_bias', disabled=True, layout=name_button_layout)
name_btn = Button(description='persistence_time', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float83 = FloatText(value='0.70', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
self.float83 = FloatText(value='5', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float83, units_btn]
box91 = Box(children=row, layout=box_layout)
name_btn = Button(description='migration_bias', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float84 = FloatText(value='0.70', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float84, units_btn]
box92 = Box(children=row, layout=box_layout)
self.bool6 = Checkbox(description='enabled', value=True,layout=name_button_layout)
self.bool7 = Checkbox(description='use_2D', value=True,layout=name_button_layout)
......@@ -976,60 +987,60 @@ class CellTypesTab(object):
self.bool8 = Checkbox(description='enabled', value=False,layout=name_button_layout)
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.chemotaxis_substrate3 = Text(value='chemokine', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.chemotaxis_substrate3]
box92 = Box(children=row, layout=box_layout)
box93 = Box(children=row, layout=box_layout)
name_btn = Button(description='direction', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
name_btn.style.button_color = 'lightgreen'
self.chemotaxis_direction3 = Text(value='1', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.chemotaxis_direction3]
box93 = Box(children=row, layout=box_layout)
box94 = Box(children=row, layout=box_layout)
# -------------------------
div_row16 = Button(description='phenotype:secretion', disabled=True, layout=divider_button_layout)
div_row16.style.button_color = 'orange'
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.text4 = Text(value='pro-inflammatory cytokine', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.text4]
box94 = Box(children=row, layout=box_layout)
box95 = Box(children=row, layout=box_layout)
name_btn = Button(description='uptake_rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float84 = FloatText(value='0.01', step='0.001', style=style, layout=widget_layout)
name_btn.style.button_color = 'lightgreen'
self.float85 = FloatText(value='0.01', step='0.001', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float84, units_btn]
box95 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float85, units_btn]
box96 = Box(children=row, layout=box_layout)
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.text5 = Text(value='chemokine', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.text5]
box96 = Box(children=row, layout=box_layout)
box97 = Box(children=row, layout=box_layout)
name_btn = Button(description='uptake_rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float85 = FloatText(value='0.01', step='0.001', style=style, layout=widget_layout)
name_btn.style.button_color = 'lightgreen'
self.float86 = FloatText(value='0.01', step='0.001', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float85, units_btn]
box97 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float86, units_btn]
box98 = Box(children=row, layout=box_layout)
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.text6 = Text(value='debris', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.text6]
box98 = Box(children=row, layout=box_layout)
box99 = Box(children=row, layout=box_layout)
name_btn = Button(description='uptake_rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float86 = FloatText(value='0.1', step='0.01', style=style, layout=widget_layout)
name_btn.style.button_color = 'lightgreen'
self.float87 = FloatText(value='0.1', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float86, units_btn]
box99 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float87, units_btn]
box100 = Box(children=row, layout=box_layout)
# ================== <custom_data>, if present ==================
self.cell_def_vbox2 = VBox([
div_row13, box86, box87, div_row14, death_model1,box88, div_row15, box89,box90,box91,self.bool6,self.bool7,chemotaxis_btn,self.bool8,box92,box93,div_row16, box94,box95,box96,box97,box98,box99, ])
div_row13, box87, box88, div_row14, death_model1,box89, div_row15, box90,box91,box92,self.bool6,self.bool7,chemotaxis_btn,self.bool8,box93,box94,div_row16, box95,box96,box97,box98,box99,box100, ])
# ------------------------------------------
self.cell_def_vboxes.append(self.cell_def_vbox2)
......@@ -1040,24 +1051,24 @@ class CellTypesTab(object):
death_model1 = Button(description='model: apoptosis', disabled=True, layout={'width':'30%'})
death_model1.style.button_color = '#ffde6b'
name_btn = Button(description='death rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float87 = FloatText(value='2.8e-4', step='1e-05', style=style, layout=widget_layout)
name_btn.style.button_color = 'tan'
self.float88 = FloatText(value='2.8e-4', step='1e-05', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
time_step = [name_btn, self.float87, units_btn, ]
box100 = Box(children=time_step, layout=box_layout)
units_btn.style.button_color = 'tan'
time_step = [name_btn, self.float88, units_btn, ]
box101 = Box(children=time_step, layout=box_layout)
# -------------------------
div_row18 = Button(description='phenotype:motility', disabled=True, layout=divider_button_layout)
div_row18.style.button_color = 'orange'
name_btn = Button(description='migration_bias', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float88 = FloatText(value='0.70', step='0.1', style=style, layout=widget_layout)
name_btn.style.button_color = 'lightgreen'
self.float89 = FloatText(value='0.70', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float88, units_btn]
box101 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float89, units_btn]
box102 = Box(children=row, layout=box_layout)
self.bool9 = Checkbox(description='enabled', value=True,layout=name_button_layout)
self.bool10 = Checkbox(description='use_2D', value=True,layout=name_button_layout)
......@@ -1067,99 +1078,99 @@ class CellTypesTab(object):
self.bool11 = Checkbox(description='enabled', value=False,layout=name_button_layout)
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.chemotaxis_substrate4 = Text(value='chemokine', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.chemotaxis_substrate4]
box102 = Box(children=row, layout=box_layout)
box103 = Box(children=row, layout=box_layout)
name_btn = Button(description='direction', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
name_btn.style.button_color = 'lightgreen'
self.chemotaxis_direction4 = Text(value='1', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.chemotaxis_direction4]
box103 = Box(children=row, layout=box_layout)
box104 = Box(children=row, layout=box_layout)
# -------------------------
div_row19 = Button(description='phenotype:volume', disabled=True, layout=divider_button_layout)
div_row19.style.button_color = 'orange'
name_btn = Button(description='total', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float89 = FloatText(value='478', step='10', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
time_step = [name_btn, self.float89, units_btn, ]
box104 = Box(children=time_step, layout=box_layout)
name_btn = Button(description='nuclear', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float90 = FloatText(value='47.8', step='1', style=style, layout=widget_layout)
self.float90 = FloatText(value='478', step='10', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
time_step = [name_btn, self.float90, units_btn, ]
box105 = Box(children=time_step, layout=box_layout)
name_btn = Button(description='nuclear', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float91 = FloatText(value='47.8', step='1', style=style, layout=widget_layout)
units_btn = Button(description='dimensionless', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
time_step = [name_btn, self.float91, units_btn, ]
box106 = Box(children=time_step, layout=box_layout)
# -------------------------
div_row20 = Button(description='phenotype:secretion', disabled=True, layout=divider_button_layout)
div_row20.style.button_color = 'orange'
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.text7 = Text(value='debris', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.text7]
box106 = Box(children=row, layout=box_layout)
box107 = Box(children=row, layout=box_layout)
name_btn = Button(description='uptake_rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float91 = FloatText(value='0', step='0.01', style=style, layout=widget_layout)
name_btn.style.button_color = 'lightgreen'
self.float92 = FloatText(value='0', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float91, units_btn]
box107 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float92, units_btn]
box108 = Box(children=row, layout=box_layout)
# -------------------------
div_row21 = Button(description='phenotype:intracellular (maboss)', disabled=True, layout=divider_button_layout)
div_row21.style.button_color = 'orange'
bnd_filename = Button(description='bnd_filename', disabled=True, layout=name_button_layout)
bnd_filename.style.button_color = 'lightgreen'
bnd_filename.style.button_color = 'tan'
self.bnd_filenames[3] = Text(value='../data/boolean_network/cd8t_cell.bnd', style=style, layout=widget_layout)
row = [bnd_filename, self.bnd_filenames[3]]
box108 = Box(children=row, layout=box_layout)
box109 = Box(children=row, layout=box_layout)
cfg_filename = Button(description='cfg_filename', disabled=True, layout=name_button_layout)
cfg_filename.style.button_color = 'tan'
cfg_filename.style.button_color = 'lightgreen'
self.cfg_filenames[3] = Text(value='../data/boolean_network/cd8t_cell.cfg', style=style, layout=widget_layout)
row = [cfg_filename, self.cfg_filenames[3]]
box109 = Box(children=row, layout=box_layout)
box110 = Box(children=row, layout=box_layout)
time_step = Button(description='time_step', disabled=True, layout=name_button_layout)
time_step.style.button_color = 'lightgreen'
self.float92 = FloatText(value='12', style=style, layout=widget_layout)
time_step.style.button_color = 'tan'
self.float93 = FloatText(value='12', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [time_step, self.float92, units_btn]
box110 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [time_step, self.float93, units_btn]
box111 = Box(children=row, layout=box_layout)
# ================== <custom_data>, if present ==================
div_row22 = Button(description='Custom Data',disabled=True, layout=divider_button_layout)
div_row22.style.button_color = 'cyan'
name_btn = Button(description='cell_attachment_rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float93 = FloatText(value='0.2', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
description_btn = Button(description='', disabled=True, layout=desc_button_layout)
description_btn.style.button_color = 'tan'
row = [name_btn, self.float93, units_btn, description_btn]
box111 = Box(children=row, layout=box_layout)
name_btn = Button(description='cell_attachment_lifetime', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float94 = FloatText(value='8.5', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
self.float94 = FloatText(value='0.2', step='0.01', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
description_btn = Button(description='', disabled=True, layout=desc_button_layout)
description_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float94, units_btn, description_btn]
box112 = Box(children=row, layout=box_layout)
name_btn = Button(description='cell_attachment_lifetime', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float95 = FloatText(value='8.5', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
description_btn = Button(description='', disabled=True, layout=desc_button_layout)
description_btn.style.button_color = 'tan'
row = [name_btn, self.float95, units_btn, description_btn]
box113 = Box(children=row, layout=box_layout)
self.cell_def_vbox3 = VBox([
div_row17, death_model1,box100, div_row18, box101,self.bool9,self.bool10,chemotaxis_btn,self.bool11,box102,box103,div_row19, box104, box105, div_row20, box106,box107,div_row21, box108,box109,box110,div_row22, box111,
box112,
div_row17, death_model1,box101, div_row18, box102,self.bool9,self.bool10,chemotaxis_btn,self.bool11,box103,box104,div_row19, box105, box106, div_row20, box107,box108,div_row21, box109,box110,box111,div_row22, box112,
box113,
])
# ------------------------------------------
self.cell_def_vboxes.append(self.cell_def_vbox3)
......@@ -1171,32 +1182,32 @@ class CellTypesTab(object):
death_model1 = Button(description='model: apoptosis', disabled=True, layout={'width':'30%'})
death_model1.style.button_color = '#ffde6b'
name_btn = Button(description='death rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float95 = FloatText(value='2.1e-4', step='1e-05', style=style, layout=widget_layout)
name_btn.style.button_color = 'lightgreen'
self.float96 = FloatText(value='2.1e-4', step='1e-05', style=style, layout=widget_layout)
units_btn = Button(description='1/min', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float95, units_btn, ]
box113 = Box(children=row, layout=box_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float96, units_btn, ]
box114 = Box(children=row, layout=box_layout)
# -------------------------
div_row24 = Button(description='phenotype:motility', disabled=True, layout=divider_button_layout)
div_row24.style.button_color = 'orange'
name_btn = Button(description='migration_bias', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float96 = FloatText(value='0.7', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float96, units_btn]
box114 = Box(children=row, layout=box_layout)
name_btn = Button(description='persistence_time', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float97 = FloatText(value='5', step='0.1', style=style, layout=widget_layout)
self.float97 = FloatText(value='0.7', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float97, units_btn]
box115 = Box(children=row, layout=box_layout)
name_btn = Button(description='persistence_time', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float98 = FloatText(value='5', step='0.1', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float98, units_btn]
box116 = Box(children=row, layout=box_layout)
self.bool12 = Checkbox(description='enabled', value=True,layout=name_button_layout)
self.bool13 = Checkbox(description='use_2D', value=True,layout=name_button_layout)
......@@ -1206,125 +1217,125 @@ class CellTypesTab(object):
self.bool14 = Checkbox(description='enabled', value=False,layout=name_button_layout)
name_btn = Button(description='substrate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
name_btn.style.button_color = 'tan'
self.chemotaxis_substrate5 = Text(value='debris', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.chemotaxis_substrate5]
box116 = Box(children=row, layout=box_layout)
box117 = Box(children=row, layout=box_layout)
name_btn = Button(description='direction', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
name_btn.style.button_color = 'lightgreen'
self.chemotaxis_direction5 = Text(value='1', disabled=False, style=style, layout=widget_layout_long)
row = [name_btn, self.chemotaxis_direction5]
box117 = Box(children=row, layout=box_layout)
box118 = Box(children=row, layout=box_layout)
# -------------------------
div_row25 = Button(description='phenotype:volume', disabled=True, layout=divider_button_layout)
div_row25.style.button_color = 'orange'
name_btn = Button(description='total', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float98 = FloatText(value='4849', step='100', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float98, units_btn, ]
box118 = Box(children=row, layout=box_layout)
name_btn = Button(description='nuclear', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float99 = FloatText(value='485', step='10', style=style, layout=widget_layout)
self.float99 = FloatText(value='4849', step='100', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float99, units_btn, ]
box119 = Box(children=row, layout=box_layout)
name_btn = Button(description='cytoplasmic_biomass_change_rate', disabled=True, layout=name_button_layout)
name_btn = Button(description='nuclear', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'lightgreen'
self.float100 = FloatText(value='0.01', step='0.001', style=style, layout=widget_layout)
self.float100 = FloatText(value='485', step='10', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'lightgreen'
row = [name_btn, self.float100, units_btn, ]
box120 = Box(children=row, layout=box_layout)
name_btn = Button(description='cytoplasmic_biomass_change_rate', disabled=True, layout=name_button_layout)
name_btn.style.button_color = 'tan'
self.float101 = FloatText(value='0.01', step='0.001', style=style, layout=widget_layout)
units_btn = Button(description='', disabled=True, layout=name_button_layout)
units_btn.style.button_color = 'tan'
row = [name_btn, self.float101, units_btn, ]
box121 = Box(children=row, layout=box_layout)
# -------------------------
div_row26 = Button(description='phenotype:intracellular (maboss)', disabled=True, layout=divider_button_layout)
div_row26.style.button_color = 'orange'
bnd_filename = Button(description='bnd_filename', disabled=True, layout=name_button_layout)
bnd_filename.style.button_color = 'tan'
bnd_filename.style.button_color = 'lightgreen'
self.bnd_filenames[4] = Text(value='../data/boolean_network/macrophage.bnd', style=style, layout=widget_layout)