From da3d15127b6e575c091a6df234f6ca032a5074ec Mon Sep 17 00:00:00 2001 From: Alberto Valdeolivas <alvaldeolivas@gmail.com> Date: Thu, 3 Mar 2022 10:37:28 +0100 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 1e672f4..528eab2 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ Phosphoproteomic data of mock-treated and SARS-CoV.2 infected cells were extract Finally, we used Carnival ([Liu et al., 2019](https://doi.org/10.1038/s41540-019-0118-z)) with the COSMOS approach ([Dugourd et al., 2021](https://doi.org/10.15252/msb.20209730)) to connect the top 10 deregulated kinases with the top 30 deregulated TFs with a Prior Knowledge Network assembled from OmniPath resources ([Türei et al., 2021](https://doi.org/10.1101/2020.08.03.221242)). Progeny pathway activity scores were used to weigh the PKN and facilitate the optimal network search to connect kinases and TFs. -To place our results in the context of the whole study, we matched the genes obtained in carnival results with those included in the curated pathways by the [Covid-19 Disease map community] (https://covid.pages.uni.lu/map_contents). +To place our results in the context of the whole study, we matched the genes obtained in carnival results with those included in the curated pathways by the [Covid-19 Disease map community](https://covid.pages.uni.lu/map_contents). ## Markdowns -- GitLab