From 594034c5a9bc898eba3160b2c47c9705f51e6955 Mon Sep 17 00:00:00 2001
From: Carlos Vega <carlos.vega@uni.lu>
Date: Tue, 19 Nov 2019 17:43:43 +0100
Subject: [PATCH] fixed imports and renamed folders
---
interface/__init__.py | 0
{jensenlab-service => jensenLabService}/__init__.py | 0
.../jensenLabService.py | 12 ++++++++----
3 files changed, 8 insertions(+), 4 deletions(-)
create mode 100644 interface/__init__.py
rename {jensenlab-service => jensenLabService}/__init__.py (100%)
rename {jensenlab-service => jensenLabService}/jensenLabService.py (85%)
diff --git a/interface/__init__.py b/interface/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/jensenlab-service/__init__.py b/jensenLabService/__init__.py
similarity index 100%
rename from jensenlab-service/__init__.py
rename to jensenLabService/__init__.py
diff --git a/jensenlab-service/jensenLabService.py b/jensenLabService/jensenLabService.py
similarity index 85%
rename from jensenlab-service/jensenLabService.py
rename to jensenLabService/jensenLabService.py
index d59666f..a30eeaa 100644
--- a/jensenlab-service/jensenLabService.py
+++ b/jensenLabService/jensenLabService.py
@@ -4,7 +4,8 @@ from typing import List
import requests
-from TextMiningService import TextMiningService, Publication
+from interface.TextMiningService import TextMiningService
+from models.publication import Publication
logger = logging.getLogger(__name__)
@@ -30,7 +31,8 @@ class JensenLabService(TextMiningService):
else:
limit_per_entity = JensenLabService.LIMIT_PER_ENTITY
for (entity, entity_type) in entities_and_types:
- publications_ids.append(self.get_mentions_for_entity(entity, entity_type, limit=limit_per_entity))
+ publications_ids.append(self.get_mentions_for_entity(
+ entity, entity_type, limit=limit_per_entity))
publications_ids_intersection = set.intersection(*publications_ids)
return [Publication(pm_id=pid) for pid in publications_ids_intersection][0:limit]
@@ -54,7 +56,8 @@ class JensenLabService(TextMiningService):
@staticmethod
def get_mentions_for_entity(entity, entity_type, limit):
- url_mentions = JensenLabService.MENTION_URL.format(entity_type, entity, limit)
+ url_mentions = JensenLabService.MENTION_URL.format(
+ entity_type, entity, limit)
results = requests.get(url_mentions)
assert results.ok
publications_string = results.content.decode().strip()
@@ -65,5 +68,6 @@ class JensenLabService(TextMiningService):
if __name__ == '__main__':
text_mining_service = JensenLabService()
print("Using service {}".format(text_mining_service.name))
- publications = text_mining_service.get_mentions(["DOID:10652", "DOID:10935"], limit=1000000)
+ publications = text_mining_service.get_mentions(
+ ["DOID:10652", "DOID:10935"], limit=1000000)
print(", ".join([p.pm_id for p in publications]))
--
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