From 53560c3c71ef71af8724788b7a7df0f132cc749e Mon Sep 17 00:00:00 2001
From: Carlos Vega <carlos.vega@uni.lu>
Date: Tue, 19 Nov 2019 12:19:01 +0100
Subject: [PATCH] added method to convert entity codes from colon to underscore
syntax
---
biokb/utils.py | 11 ++++++++---
1 file changed, 8 insertions(+), 3 deletions(-)
diff --git a/biokb/utils.py b/biokb/utils.py
index 092c792..270a7ec 100644
--- a/biokb/utils.py
+++ b/biokb/utils.py
@@ -1,5 +1,10 @@
-def uri_to_code(uri: str) -> str:
- """Translates URIs such as http://lcsb.uni.lu/biokb/entities/BTO_0001043 to BTO_0001043
+def standarise_underscored_entity_code(entity_code: str) -> str:
+ return entity_code.replace(':', '_', 1)
+
+
+def uri_to_entity_code(uri: str) -> str:
+ """Translates URIs such as http://lcsb.uni.lu/biokb/entities/BTO_0001043 to BTO:0001043
+ Replaces only the first underscore with colon.
Arguments:
uri {str} -- [description]
@@ -7,4 +12,4 @@ def uri_to_code(uri: str) -> str:
Returns:
str -- [description]
"""
- return uri.split('/')[-1]
+ return uri.split('/')[-1].replace('_', ':', 1)
--
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