Commit fb221176 authored by Leon-Charles Tranchevent's avatar Leon-Charles Tranchevent
Browse files

Switched to Rlib (step 5 - limma only).

parent 545185e7
......@@ -12,5 +12,5 @@ mods:
- ['GSE8397', 'GSM208634.cel.gz,GSM208637.cel.gz,GSM208638.cel.gz,GSM208654.cel.gz', '']
- ['Simunovic', 'park_1143_01.cel,park_1148_01.cel', '']
- ['E-MEXP-1416', '', '']
- ['HG-U133A', 'GSM208634.cel.gz,GSM208637.cel.gz,GSM208638.cel.gz,GSM506020.CEL.gz', 'GSM506004.CEL;Gender;M,GSM506010.CEL;Gender;F,GSM506011.CEL;Gender;M,GSM506012.CEL;Gender;F']
- ['HG-U133_Plus_2', 'GSM503952_C_2829_SNc.CEL.gz,GSM503959_PD_1401_SNc.CEL.gz,GSM503966_PD_5138_SNc.CEL.gz', '']
- ['HG-U133A', 'GSM208634.cel,GSM208637.cel,GSM208638.cel,GSM506020.CEL', 'GSM506004.CEL;Gender;M,GSM506010.CEL;Gender;F,GSM506011.CEL;Gender;M,GSM506012.CEL;Gender;F']
- ['HG-U133_Plus_2', 'GSM503952_C_2829_SNc.CEL,GSM503959_PD_1401_SNc.CEL,GSM503966_PD_5138_SNc.CEL', '']
This diff is collapsed.
local_input_data_dir: !!str '04/'
local_data_dir: !!str '05/'
local_code_dir: !!str '05-Get_DEGs/'
limma_analyses:
-
- Gender
- ["F - M"]
- ["FemaleVsMale"]
-
- Disease.status
- ["PD - Control"]
- ["PDVsControl"]
-
- gender_disease_status
- ["F.PD - F.Control", "M.PD - M.Control", "(F.PD - F.Control) - (M.PD - M.Control)"]
- ["PDVsControl_females", "PDVsControl_males", "Gender_disease_status"]
-
- gender_disease_status
- ["F.PD - M.PD", "F.Control - M.Control", "(F.PD - M.PD) - (F.Control - M.Control)"]
- ["FemaleVsMale_PD", "FemaleVsMale_control", "Disease_status_gender"]
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