The objectives of this step is to identify the differentially expressed genes of each dataset, and for various comparisons of interest (e.g., female vs male, disease versus control).
This produces gene lists that can be then used for pathway and network analyses.
This produces gene lists that can be then used for the pathway and network analyses.
# Details and instructions
The datasets are processed one by one to identify differentially expressed genes (using limma). The following analyses are performed: