Commit 8f57bd4b authored by Leon-Charles Tranchevent's avatar Leon-Charles Tranchevent
Browse files

Changed some comments that were understood by cylon-x as statements about licenses.

parent 6ede0b4c
...@@ -85,7 +85,7 @@ for (i in seq_len(length(config$datasets))) { ...@@ -85,7 +85,7 @@ for (i in seq_len(length(config$datasets))) {
# Annotate the eset with gene information for better outputs. # Annotate the eset with gene information for better outputs.
# First, we collect raw the gene annotations and we have two options # First, we collect raw the gene annotations and we have two options
# either from the Bioconductor package or from the processed GPL file. # either from the Bioconductor package or from the processed GEO plateform annotation file.
platform_config <- get_platform(config, dataset$array_type) platform_config <- get_platform(config, dataset$array_type)
# We enrich the probe identifiers with the corresponding gene names using # We enrich the probe identifiers with the corresponding gene names using
......
...@@ -138,7 +138,7 @@ for (i in seq_len(length(config$integrations))) { ...@@ -138,7 +138,7 @@ for (i in seq_len(length(config$integrations))) {
rm(M_filename, F_filename, M_data, F_data) rm(M_filename, F_filename, M_data, F_data)
# #
# GO-CC by CP # GO-CellularComponent by CP
# #
M_filename <- paste0(output_data_dir, "CP_", male_prefix, "max-avg_gs_pivalue_gsea_GOCC.tsv") M_filename <- paste0(output_data_dir, "CP_", male_prefix, "max-avg_gs_pivalue_gsea_GOCC.tsv")
F_filename <- paste0(output_data_dir, "CP_", female_prefix, "max-avg_gs_pivalue_gsea_GOCC.tsv") F_filename <- paste0(output_data_dir, "CP_", female_prefix, "max-avg_gs_pivalue_gsea_GOCC.tsv")
......
...@@ -146,7 +146,7 @@ for (i in seq_len(length(config$integrations))) { ...@@ -146,7 +146,7 @@ for (i in seq_len(length(config$integrations))) {
rm(M_filename, F_filename, M_data, F_data) rm(M_filename, F_filename, M_data, F_data)
# #
# GO-CC by CP # GO-CellularComponent by CP
# #
M_filename <- paste0(output_data_dir, "CP_", male_prefix, "max-avg_all_pivalue_gsea_GOCC.tsv") M_filename <- paste0(output_data_dir, "CP_", male_prefix, "max-avg_all_pivalue_gsea_GOCC.tsv")
F_filename <- paste0(output_data_dir, "CP_", female_prefix, "max-avg_all_pivalue_gsea_GOCC.tsv") F_filename <- paste0(output_data_dir, "CP_", female_prefix, "max-avg_all_pivalue_gsea_GOCC.tsv")
......
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