Commits · master · BDS / GeneDER / ArrayUtils · GitLab

16 Mar, 2021 5 commits
- Merge branch 'develop' into 'master'. · d767e271
  Leon-Charles Tranchevent authored Mar 16, 2021
  
  d767e271
- Added readme and license files. · 60786b39
  Leon-Charles Tranchevent authored Mar 16, 2021
  
  60786b39
- Minor changes to the file laoding system. · 326b437e
  Leon-Charles Tranchevent authored Mar 16, 2021
  
  326b437e
- Adapted Affymetric QC. · 334980ee
  Leon-Charles Tranchevent authored Mar 16, 2021
  
  334980ee
- Added RNA-seq support. · 056b87fa
  Leon-Charles Tranchevent authored Mar 16, 2021
  
  056b87fa
10 Apr, 2020 1 commit
- Minor modifications (based on coding style). · 4299aa24
  Leon-Charles Tranchevent authored Apr 10, 2020
  
  4299aa24
07 Apr, 2020 1 commit
- New parameter for limma analysis: possibility to include gender as a co-factor. · cd16e491
  Leon-Charles Tranchevent authored Apr 07, 2020
  
  cd16e491
14 Feb, 2020 1 commit
- Added support for RNA-seq data analysis (differential expression / limma). · ebc03074
  Leon-Charles Tranchevent authored Feb 14, 2020
  
  ebc03074
20 Dec, 2019 1 commit
- A few minor updates based on lintR feedback about coding style. · f107b6ac
  Leon-Charles Tranchevent authored Dec 20, 2019
  
  f107b6ac
11 Dec, 2019 1 commit
- Merge branch 'develop' into master for v0.4. · 6df04fcd
  Leon-Charles Tranchevent authored Dec 11, 2019
  
  6df04fcd
01 Oct, 2019 1 commit
- Added the support for GCRMA data generated using APT (Affymetrix Power Tools). · 688d482a
  Leon-Charles Tranchevent authored Oct 01, 2019
  
  688d482a
27 Sep, 2019 1 commit
- Bug correction in preprocessing (inversion correction / no correction) · be579cbe
  Leon-Charles Tranchevent authored Sep 27, 2019
  
  be579cbe
26 Sep, 2019 1 commit
- Bug correction in Limma/TopConfects comparison (limma was limited to top 10 genes). · 30af472b
  Leon-Charles Tranchevent authored Sep 26, 2019
  
  30af472b
24 Sep, 2019 1 commit
- Improved limma analysis (more parameters / co-factors). · 7581f7f8
  Leon-Charles Tranchevent authored Sep 24, 2019
  
  7581f7f8
08 Aug, 2019 1 commit
- Some refactoring, better logs, improved GC / mem usage. · 673b161e
  Leon-Charles Tranchevent authored Aug 08, 2019
  
  673b161e
29 Jul, 2019 1 commit
- Small correction in file / folder naming for batch correction. · 24846b85
  Leon-Charles Tranchevent authored Jul 29, 2019
  
  24846b85
19 Jul, 2019 1 commit
- Added batch correction for all non-SCAN pre-processing methods. Changed Limma... · 6d95399a
  Leon-Charles Tranchevent authored Jul 19, 2019
```
Added batch correction for all non-SCAN pre-processing methods. Changed Limma to add age as a co-factor when possible.
```
  6d95399a
11 Jul, 2019 1 commit
- Added GC-RMA support for Affymetrix arrays. · 7cb20fd2
  Leon-Charles Tranchevent authored Jul 11, 2019
  
  7cb20fd2
25 Jun, 2019 2 commits
- Linted code. · fdeae68b
  Leon-Charles Tranchevent authored Jun 25, 2019
  
  fdeae68b
- Limma analysis: support of GPL files for getting gene annotations. · 947909fd
  Leon-Charles Tranchevent authored Jun 25, 2019
  
  947909fd
20 Jun, 2019 1 commit
- Limma anlaysis: integration of co-factor and block key usage (for datasets with paired samples). · bdb15ba2
  Leon-Charles Tranchevent authored Jun 20, 2019
  
  bdb15ba2
18 Jun, 2019 1 commit
- Replaced probe ids by probe names for Agilent data processing. · 231e050f
  Leon-Charles Tranchevent authored Jun 18, 2019
  
  231e050f
14 Jun, 2019 3 commits
- Bug correction: dev.off error in Agilent QC-I. · ccb29793
  Leon-Charles Tranchevent authored Jun 14, 2019
  
  ccb29793
- Adjusted the version number in DESCRIPTION. · 4ed55a03
  Leon-Charles Tranchevent authored Jun 14, 2019
  
  4ed55a03
- Cosmetic changes to satisfy lintR. · f1ee8c05
  Leon-Charles Tranchevent authored Jun 14, 2019
  
  f1ee8c05
13 Jun, 2019 1 commit
- Agilent/Illumina support for quality control and preprocessing. · 79e9bae7
  Leon-Charles Tranchevent authored Jun 13, 2019
  
  79e9bae7
07 Jun, 2019 1 commit
- Added Agilent support for quality control. · 13644b47
  Leon-Charles Tranchevent authored Jun 07, 2019
  
  13644b47
03 May, 2019 1 commit
- Merge branch 'develop' into 'master' for v0.2. · c2828e2d
  Leon-Charles Tranchevent authored May 03, 2019
  
  c2828e2d
24 Apr, 2019 1 commit
- Added the functions related to Limma analyses. · 64af219d
  Leon-Charles Tranchevent authored Apr 24, 2019
  
  64af219d
23 Apr, 2019 1 commit
- Added option to get the pheno data as factors or not. · a0ff6216
  Leon-Charles Tranchevent authored Apr 23, 2019
  
  a0ff6216
19 Apr, 2019 1 commit
- Updated the version number in R description file. · 434ffc66
  Leon-Charles Tranchevent authored Apr 19, 2019
  
  434ffc66
18 Apr, 2019 1 commit
- Added more processing functions and gender prediction methods. · 1d0ee0bb
  Leon-Charles Tranchevent authored Apr 18, 2019
  
  1d0ee0bb
17 Apr, 2019 2 commits
- Preprocessing functions added. · ada4dbce
  Leon-Charles Tranchevent authored Apr 17, 2019
  
  ada4dbce
- Added a function to run a quality control test. · 53aad4aa
  Leon-Charles Tranchevent authored Apr 17, 2019
  
  53aad4aa