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Commit 60786b39 authored by Leon-Charles Tranchevent's avatar Leon-Charles Tranchevent
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Added readme and license files.

parent 326b437e
Package: ArrayUtils Package: ArrayUtils
Type: Package Type: Package
Title: Utils For Array Processing Title: Utils For Array Processing
Version: 0.3.3 Version: 0.4.0
Author: Leon-Charles Tranchevent Author: Leon-Charles Tranchevent
Maintainer: Leon-Charles Tranchevent <leon-charles.tranchevent@uni.lu> Maintainer: Leon-Charles Tranchevent <leon-charles.tranchevent@uni.lu>
Description: This package contains functions to analyse microarray data. Description: This package contains functions to analyse microarray data.
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This is free and unencumbered software released into the public domain. Copyright (c) 2019-2021 Biomedical Data Science (BDS), Luxembourg Centre for
Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg
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For more information, please refer to <http://unlicense.org>
# ArrayUtils
## Table of contents
* [Introduction](#introduction)
* [Content](#content)
* [License](#license)
## Introduction
This repository contains the code behind the R package `ArrayUtils` that contains functions to analyze expression data from various platforms (including Affymetrix, Illumina and Agilent). The code consists of R scripts that rely on established R and BioConductor packages that focuses on the analysis of expression data such as `affy`. The current package offers high-level interfaces to these packages.
## Content
The following functionalities are available:
- Run quality control (platform specific methods)
- Pre-process data (platform specific methods)
- Batch effect correction
- Predict biological sex from expression data
- Differential expression analysis
## License
The code is available under the MIT License.
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