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Commit 60786b39 authored by Leon-Charles Tranchevent's avatar Leon-Charles Tranchevent
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Added readme and license files.

parent 326b437e
Package: ArrayUtils
Type: Package
Title: Utils For Array Processing
Version: 0.3.3
Version: 0.4.0
Author: Leon-Charles Tranchevent
Maintainer: Leon-Charles Tranchevent <leon-charles.tranchevent@uni.lu>
Description: This package contains functions to analyse microarray data.
......
This is free and unencumbered software released into the public domain.
Copyright (c) 2019-2021 Biomedical Data Science (BDS), Luxembourg Centre for
Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg
Anyone is free to copy, modify, publish, use, compile, sell, or
distribute this software, either in source code form or as a compiled
binary, for any purpose, commercial or non-commercial, and by any
means.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
In jurisdictions that recognize copyright laws, the author or authors
of this software dedicate any and all copyright interest in the
software to the public domain. We make this dedication for the benefit
of the public at large and to the detriment of our heirs and
successors. We intend this dedication to be an overt act of
relinquishment in perpetuity of all present and future rights to this
software under copyright law.
The above copyright notice and this permission notice shall be included in all
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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For more information, please refer to <http://unlicense.org>
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# ArrayUtils
## Table of contents
* [Introduction](#introduction)
* [Content](#content)
* [License](#license)
## Introduction
This repository contains the code behind the R package `ArrayUtils` that contains functions to analyze expression data from various platforms (including Affymetrix, Illumina and Agilent). The code consists of R scripts that rely on established R and BioConductor packages that focuses on the analysis of expression data such as `affy`. The current package offers high-level interfaces to these packages.
## Content
The following functionalities are available:
- Run quality control (platform specific methods)
- Pre-process data (platform specific methods)
- Batch effect correction
- Predict biological sex from expression data
- Differential expression analysis
## License
The code is available under the MIT License.
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