Issues · Aurélien Ginolhac / snakemake-rna-seq · GitLab

more strict on the units.tsv / samples.tsv

#12 · created Mar 01, 2022 by Aurélien Ginolhac
- 0
updated Mar 01, 2022
check that samples in any config files are not duplicated

#11 · created Dec 08, 2021 by Aurélien Ginolhac
- 0
updated Dec 08, 2021
new deseq2 check counts column names

#10 · created Dec 01, 2021 by Aurélien Ginolhac
- CLOSED
- 0
updated Dec 01, 2021
featureCounts cannot deal with BAMs in both SE and PE

#9 · created Nov 25, 2021 by Aurélien Ginolhac
- CLOSED
- 0
updated Nov 26, 2021
container should one specified once in Snakefile

#8 · created Sep 17, 2021 by Aurélien Ginolhac
- CLOSED
- 0
updated Nov 26, 2021
cannot trim with more than one adapter

#7 · created Jun 11, 2021 by Aurélien Ginolhac
- 0
updated Jun 11, 2021
fastq_screen wrapper is not dealing with `seq` in fastq names

#6 · created Nov 05, 2020 by Aurélien Ginolhac
- 0
updated Nov 05, 2020
check if samples are congruent between units.tsv and samples.tsv

#4 · created Sep 29, 2020 by Aurélien Ginolhac
- CLOSED
- 0
updated Oct 02, 2020
makes dashes forbidden, or replace automatically by underscores

#5 · created Oct 01, 2020 by Aurélien Ginolhac
- CLOSED
- 0
updated Oct 02, 2020
featuresCount not prepare to deal with paired-end reads

#3 · created Sep 17, 2020 by Aurélien Ginolhac
- CLOSED
- 0
updated Sep 17, 2020
technical replicates from units are not collapsed

#2 · created Sep 07, 2020 by Aurélien Ginolhac
- CLOSED
- 0
updated Sep 10, 2020
paired-end mode "InputFiles" object has no attributes "fq1"

#1 · created Sep 07, 2020 by Aurélien Ginolhac
- CLOSED
- 0
updated Sep 10, 2020