1. 18 May, 2020 1 commit
    • Antonie Vietor's avatar
      Mapping and duplicate marking (#2) · bb5a88a1
      Antonie Vietor authored
      * trimming with cutadapt added
      
      * additions to cutadapt according to View #1, BWA added as draft
      
      * adding cutadapt comments back, bwa mem will be moved to a new branch
      
      * mapping, duplicate marking and merging
      
      * changes according View #2 added, some minor additional changes with handling cutadapt-log-files for multiqc input in common.smk were necessary
      
      * code formatting with black
      
      * changes according view #2 added and replaced directory name mapped with merged in bwa_mem output, because its bam files are only temporary and otherwise the empty mapped directory would remain after the workflow-run
      
      * view #2: output path for rule bwa_mem and input path for rule merge_bams changed
      bb5a88a1
  2. 07 May, 2020 1 commit
    • AntonieV's avatar
      trimming with cutadapt added (#1) · 3f3ed4f5
      AntonieV authored
      * trimming with cutadapt added
      
      * additions to cutadapt according to View #1, BWA added as draft
      
      * adding cutadapt comments back, bwa mem will be moved to a new branch
      3f3ed4f5
  3. 30 Apr, 2020 1 commit
  4. 29 Apr, 2020 1 commit
  5. 28 Apr, 2020 1 commit
  6. 22 Apr, 2020 1 commit
  7. 15 Apr, 2020 2 commits