# TODO: move adapter parameters into a `adapter` column in units.tsv and check for its presence via the units.schema.yaml -- this enables unit-specific adapters, e.g. when integrating multiple datasets
# these cutadapt parameters need to contain the required flag(s) for
# TODO: move adapter parameters into a `adapter` column in units.tsv and check for its presence via the units.schema.yaml -- this enables unit-specific adapters, e.g. when integrating multiple datasets
# these cutadapt parameters need to contain the required flag(s) for
A 1 data/atacseq/test-datasets/testdata/SRR1822153_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822153_2.fastq.gz ILLUMINA
B 1 data/atacseq/test-datasets/testdata/SRR1822154_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822154_2.fastq.gz ILLUMINA
C 1 data/atacseq/test-datasets/testdata/SRR1822157_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822157_2.fastq.gz ILLUMINA
D 1 data/atacseq/test-datasets/testdata/SRR1822158_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822158_2.fastq.gz ILLUMINA
E 1 data/chipseq/test-datasets/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R1.fastq.gz data/chipseq/test-datasets/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz ILLUMINA
F 1 data/chipseq/test-datasets/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz data/chipseq/test-datasets/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz ILLUMINA
# TODO: move adapter parameters into a `adapter` column in units.tsv and check for its presence via the units.schema.yaml -- this enables unit-specific adapters, e.g. when integrating multiple datasets
# these cutadapt parameters need to contain the required flag(s) for