This [workflow](https://git-r3lab.uni.lu/aurelien.ginolhac/snakemake-chip-seq) is derived from [Snakemake template](https://github.com/snakemake-workflows/chipseq)(itself port of the [nextflow chipseq pipeline](https://nf-co.re/chipseq)) and performs ChIP-seq peak-calling, QC and differential analysis.
This [workflow](https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq) is derived from [Snakemake template](https://github.com/snakemake-workflows/chipseq)(itself port of the [nextflow chipseq pipeline](https://nf-co.re/chipseq)) and performs ChIP-seq peak-calling, QC and differential analysis.
## Overview
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@@ -77,7 +77,7 @@ and run the following commands:
```bash
VERSION="v0.0.9"
wget -qO- https://git-r3lab.uni.lu/aurelien.ginolhac/snakemake-chip-seq/-/archive/${VERSION}/snakemake-chip-seq-.tar.gz | tar xfz - --strip-components=1
wget -qO- https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq/-/archive/${VERSION}/snakemake-chip-seq-.tar.gz | tar xfz - --strip-components=1
```
this command will download, extract (without the root folder) the following files:
[**ChIP-seq** peak-calling, QC and differential analysis pipeline](https://git-r3lab.uni.lu/aurelien.ginolhac/snakemake-chip-seq),
derived from [Snakemake template](https://github.com/snakemake-workflows/chipseq) (itself port of the `nextflow pipeline <https://nf-co.re/chipseq>`_).
**ChIP-seq** peak-calling, QC and differential analysis pipelinehttps://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq,
derived from the Snakemake templatehttps://github.com/snakemake-workflows/chipseq