new gitlab URL

CHANGELOG.md

@@ -11,5 +11,5 @@
 - [Singularity](https://sylabs.io/singularity/) using a docker image published on [Docker hub](https://hub.docker.com/r/ginolhac/snake-chip-seq)
 - [AdapterRemoval](https://adapterremoval.readthedocs.io/en/latest/) for trimming (replacement of `cutadapt`)
 - add [FastqScreen](https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/)
-- drop `DESeq2` for contrast in favor to the dedicated tool: [`DiffBind`](https://bioconductor.org/packages/release/bioc/html/DiffBind.html)
+- drop `DESeq2` for contrast in favor to the dedicated tool: [`DiffBind`](https://bioconductor.org/packages/release/bioc/html/DiffBind.html) #TODO
 - don't import the IGV session in report, the HTML becomes too large
\ No newline at end of file

README.md

@@ -2,7 +2,7 @@
 
 [![Snakemake](https://img.shields.io/badge/snakemake-≥6.4.0-brightgreen.svg)](https://snakemake.github.io)
 
-This [workflow](https://git-r3lab.uni.lu/aurelien.ginolhac/snakemake-chip-seq) is derived from [Snakemake template](https://github.com/snakemake-workflows/chipseq) (itself port of the [nextflow chipseq pipeline](https://nf-co.re/chipseq)) and performs ChIP-seq peak-calling, QC and differential analysis.
+This [workflow](https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq) is derived from [Snakemake template](https://github.com/snakemake-workflows/chipseq) (itself port of the [nextflow chipseq pipeline](https://nf-co.re/chipseq)) and performs ChIP-seq peak-calling, QC and differential analysis.
 
 
 ## Overview
@@ -77,7 +77,7 @@ and run the following commands:
 
 ```bash
 VERSION="v0.0.9"
-wget -qO- https://git-r3lab.uni.lu/aurelien.ginolhac/snakemake-chip-seq/-/archive/${VERSION}/snakemake-chip-seq-.tar.gz | tar xfz - --strip-components=1
+wget -qO- https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq/-/archive/${VERSION}/snakemake-chip-seq-.tar.gz | tar xfz - --strip-components=1
 ```
 
 this command will download, extract (without the root folder) the following files:

workflow/report/workflow.rst

-[**ChIP-seq** peak-calling, QC and differential analysis pipeline](https://git-r3lab.uni.lu/aurelien.ginolhac/snakemake-chip-seq),
- derived from [Snakemake template](https://github.com/snakemake-workflows/chipseq) (itself port of the `nextflow pipeline <https://nf-co.re/chipseq>`_).
+**ChIP-seq** peak-calling, QC and differential analysis pipeline https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq,
+ derived from the Snakemake template https://github.com/snakemake-workflows/chipseq