sample unit fragment_len_mean fragment_len_sd fq1 fq2 sra_accession platform
sample unit fq1 fq2 sra_accession platform
A 1 data/atacseq/test-datasets/testdata/SRR1822153_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822153_2.fastq.gz ILLUMINA
B 1 data/atacseq/test-datasets/testdata/SRR1822154_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822154_2.fastq.gz ILLUMINA
C 1 300 14 data/atacseq/test-datasets/testdata/SRR1822157_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822157_2.fastq.gz ILLUMINA
C 1 data/atacseq/test-datasets/testdata/SRR1822157_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822157_2.fastq.gz ILLUMINA
D 1 data/atacseq/test-datasets/testdata/SRR1822158_1.fastq.gz data/atacseq/test-datasets/testdata/SRR1822158_2.fastq.gz ILLUMINA
E 1 data/chipseq/test-datasets/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R1.fastq.gz data/chipseq/test-datasets/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz ILLUMINA
F 1 data/chipseq/test-datasets/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz data/chipseq/test-datasets/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz ILLUMINA
**MultiQC** report is a collection of multiple plots and stats from Chip-seq processing pipeline (phantompeakqualtools),
Preseq analysis, metrics from Picard and Samtools. There are also quality control metrics and plots from FastQC analysis.
Detailed descriptions of the individual plots and statistics can be found in MultiQC report.
The **MultiQC** report is a collection of multiple plots, stats and metrics from phantompeakqualtools (Chip-seq processing), Preseq, Picard, Samtools and FastQC.
For detailed descriptions of the individual plots and statistics, load the MultiQC report by clicking on it.
`Homer annotatePeaks <http://homer.ucsd.edu/homer/ngs/annotation.html>`_ is used to annotate the peaks relative
to known genomic features. The plots of this analysis show for all samples and their associated controls peak location
relative to annotation, percentage of unique genes to closest peak an peak distribution relative to TSS (Transcription Start Site).
`Homer annotatePeaks <http://homer.ucsd.edu/homer/ngs/annotation.html>`_ assigns known genomic features to peaks.
For each sample-control pair, plots show the peak locations relative to annotated features, the percentage of unique genes to closest peak and the peak distribution relative to TSS (Transcription Start Site).
