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Aurélien Ginolhac
snakemake-chip-seq
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a09bd0bb
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Commit
a09bd0bb
authored
Aug 17, 2021
by
Aurélien Ginolhac
🚴
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README.md
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@@ -83,8 +83,8 @@ wget -qO- https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq/-/arch
this command will download, extract (without the root folder) the following files:
```
config/
CHANGELOG.md
config/
Dockerfile
LICENSE
README.md
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@@ -220,6 +220,9 @@ Failed to create bus connection: Host is down
logs/fastqc/Spt5.1.1.log' which didn't exist, or couldn't be read
```
The full workflow takes less than 15 minutes, most steps are done within 5 minutes.
The rule
`plot_fingerprint`
is the longest step.
3.
If the previous step was successful, one can obtain the report by running
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config/samples.tsv
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sample group batch_effect control antibody
Spt5_IN SptA batch1 Spt
Spt5 SptA batch1 Spt5_IN Spt
\ No newline at end of file
Spt5 SptA batch1 Spt5_IN Spt
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