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Aurélien Ginolhac
snakemake-chip-seq
Commits
91b476aa
Verified
Commit
91b476aa
authored
Jul 23, 2021
by
Aurélien Ginolhac
🚴
Browse files
prepare for v0.1
parent
c5d0e4fe
Changes
1
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README.md
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91b476aa
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@@ -76,7 +76,7 @@ cd snakemake-chip-seq
and run the following commands:
```
bash
VERSION
=
"v0.
0.9
"
VERSION
=
"v0.
1.0
"
wget
-qO-
https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-chip-seq/-/archive/
${
VERSION
}
/snakemake-chip-seq-.tar.gz |
tar
xfz -
--strip-components
=
1
```
...
...
@@ -212,6 +212,13 @@ export SNAKEMAKE_OUTPUT_CACHE=${SCRATCH}/tmp
snakemake
--use-singularity
--singularity-args
"-B /scratch/users/aginolhac:/scratch/users/aginolhac"
--cache
-j
6
```
The following warnings can be ignored:
```
System has not been booted with systemd as init system (PID 1). Can't operate.
Failed to create bus connection: Host is down
logs/fastqc/Spt5.1.1.log' which didn't exist, or couldn't be read
```
3.
If the previous step was successful, one can obtain the report by running
...
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