add one unit for one sample

config/config.yaml

@@ -4,7 +4,7 @@
 samples: "config/samples.tsv"
 # The source of fastq files for every sequencing unit of all samples has to be provided in the units.tsv file.
 units: "config/units.tsv"
-single_end: False
+single_end: True
 
 resources:
   ref:
@@ -44,18 +44,18 @@ params:
     # when activated the plot profile and heatmap plot are generated, this involves a matrix calculation that requires a lot of working memory.
     activate: False
   lc_extrap:
-    activate: True
+    activate: False
   picard_metrics:
     activate: True
   deseq2:
     # set to True to use the vst transformation instead of the rlog transformation for the DESeq2 analysis
     vst: False
   peak-annotation-analysis:
-    activate: True
+    activate: False
   peak-qc:
     activate: True
   consensus-peak-analysis:
-    activate: True
+    activate: False
   # samtools view parameter suggestions (for full parameters, see: https://www.htslib.org/doc/samtools-view.html):
   # if duplicates should be removed in this filtering, add "-F 0x0400" to the params
   # if for each read, you only want to retain a single (best) mapping, add "-q 1" to params

config/units.tsv

@@ -2,5 +2,6 @@ sample	unit	fq1	fq2	sra_accession	platform
 A	1	data/single_end_test_data/A-1_chr21.fastq.gz			ILLUMINA
 B	1	data/single_end_test_data/B-1_chr21.fastq.gz			ILLUMINA
 C	1	data/single_end_test_data/C-1_chr21.fastq.gz			ILLUMINA
+C	2	data/single_end_test_data/C-2_chr21.fastq.gz			ILLUMINA
 D	1	data/single_end_test_data/D-1_chr21.fastq.gz			ILLUMINA
 E	1	data/single_end_test_data/E-1_chr21.fastq.gz			ILLUMINA