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Aurélien Ginolhac
snakemake-chip-seq
Commits
6cf223cd
Commit
6cf223cd
authored
Jun 24, 2021
by
AntonieV
Browse files
env for zip added and some other minor changes
parent
ef5f66c8
Changes
2
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workflow/envs/gzip.yaml
0 → 100644
View file @
6cf223cd
channels
:
-
conda-forge
-
defaults
dependencies
:
-
gzip ==1.10
workflow/rules/igv_session.smk
View file @
6cf223cd
...
...
@@ -65,10 +65,12 @@ rule collect_igv_report_session_files:
# igv session that can be downloaded from generated report
rule zip_igv_report_session:
input:
directory("results/IGV/
report_
igv_
session
")
rules.collect_igv_
report_session
_files.output
output:
report("results/IGV/report_igv_session.zip", caption = "../report/igv_session.rst", category="IGV session")
log:
"logs/igv/collect_igv_report_session_files.log"
conda:
"../envs/gzip.yaml"
shell:
"cd $(dirname {input}); zip $(basename {output}) $(basename {input})/*"
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