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Aurélien Ginolhac
snakemake-chip-seq
Commits
67a6be3a
Verified
Commit
67a6be3a
authored
Jul 07, 2021
by
Aurélien Ginolhac
🚴
Browse files
fix locations of 2 executables
parent
f8084486
Changes
1
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Dockerfile
View file @
67a6be3a
...
...
@@ -2,7 +2,7 @@ FROM rocker/r-ubuntu:20.04
LABEL
org.opencontainers.image.authors="Aurelien Ginolhac <aurelien.ginolhac@uni.lu>"
# build with docker build -t ginolhac/snake-chip-seq:0.1 - < Dockerfile
# build with
:
docker build -t ginolhac/snake-chip-seq:0.1 - < Dockerfile
# docker push ginolhac/snake-chip-seq:0.1
LABEL
version="0.1"
...
...
@@ -79,7 +79,7 @@ ARG PRESEQ_VERSION="3.1.2"
RUN
cd
/opt
&&
\
wget
--no-check-certificate
https://github.com/smithlabcode/preseq/releases/download/v
${
PRESEQ_VERSION
}
/preseq-
${
PRESEQ_VERSION
}
.tar.gz
&&
\
tar
-xf
preseq-
${
PRESEQ_VERSION
}
.tar.gz
&&
rm
preseq-
${
PRESEQ_VERSION
}
.tar.gz
&&
\
cd
preseq-
${
PRESEQ_VERSION
}
&&
./configure
--prefix
=
/usr/local/
bin
&&
make
&&
make
install
&&
make clean
cd
preseq-
${
PRESEQ_VERSION
}
&&
./configure
--prefix
=
/usr/local/
&&
make
&&
make
install
&&
make clean
# HOMER
RUN
mkdir
/opt/HOMER
&&
cd
/opt/HOMER
&&
\
...
...
@@ -145,7 +145,7 @@ RUN cd /opt && \
tar
-xf
${
PHANTOMPEAKQUALTOOLS_VERSION
}
.tar.gz
&&
rm
${
PHANTOMPEAKQUALTOOLS_VERSION
}
.tar.gz
&&
\
cd
phantompeakqualtools-
${
PHANTOMPEAKQUALTOOLS_VERSION
}
&&
\
wget https://github.com/hms-dbmi/spp/archive/1.15.2.tar.gz
&&
\
Rscript
-e
'install.packages("1.15.2.tar.gz")'
&&
ln
-s
phantompeakqualtools-1.2.2/run_spp.R /usr/local/bin/
Rscript
-e
'install.packages("1.15.2.tar.gz")'
&&
ln
-s
/opt/
phantompeakqualtools-1.2.2/run_spp.R /usr/local/bin/
# clean up
RUN
apt-get clean
&&
\
...
...
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