Skip to content

GitLab

Verified Commit 67a6be3a authored by Aurélien Ginolhac's avatar Aurélien Ginolhac 🚴
Browse files

fix locations of 2 executables

parent f8084486
Hide whitespace changes
Inline Side-by-side
Showing with 3 additions and 3 deletions
Dockerfile
View file @ 67a6be3a
......@@ -2,7 +2,7 @@ FROM rocker/r-ubuntu:20.04
LABEL org.opencontainers.image.authors="Aurelien Ginolhac <aurelien.ginolhac@uni.lu>"
# build with docker build -t ginolhac/snake-chip-seq:0.1 - < Dockerfile
# build with: docker build -t ginolhac/snake-chip-seq:0.1 - < Dockerfile
# docker push ginolhac/snake-chip-seq:0.1
LABEL version="0.1"
......@@ -79,7 +79,7 @@ ARG PRESEQ_VERSION="3.1.2"
RUN cd /opt && \
wget --no-check-certificate https://github.com/smithlabcode/preseq/releases/download/v${PRESEQ_VERSION}/preseq-${PRESEQ_VERSION}.tar.gz && \
tar -xf preseq-${PRESEQ_VERSION}.tar.gz && rm preseq-${PRESEQ_VERSION}.tar.gz && \
cd preseq-${PRESEQ_VERSION} && ./configure --prefix=/usr/local/bin && make && make install && make clean
cd preseq-${PRESEQ_VERSION} && ./configure --prefix=/usr/local/ && make && make install && make clean
# HOMER
RUN mkdir /opt/HOMER && cd /opt/HOMER && \
......@@ -145,7 +145,7 @@ RUN cd /opt && \
tar -xf ${PHANTOMPEAKQUALTOOLS_VERSION}.tar.gz && rm ${PHANTOMPEAKQUALTOOLS_VERSION}.tar.gz && \
cd phantompeakqualtools-${PHANTOMPEAKQUALTOOLS_VERSION} && \
wget https://github.com/hms-dbmi/spp/archive/1.15.2.tar.gz && \
Rscript -e 'install.packages("1.15.2.tar.gz")' && ln -s phantompeakqualtools-1.2.2/run_spp.R /usr/local/bin/
Rscript -e 'install.packages("1.15.2.tar.gz")' && ln -s /opt/phantompeakqualtools-1.2.2/run_spp.R /usr/local/bin/
# clean up
RUN apt-get clean && \
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment