Verified Commit 252e1123 authored by Aurélien Ginolhac's avatar Aurélien Ginolhac 🚴
Browse files

missing featureCoutns

parent 81909f3f
...@@ -127,6 +127,13 @@ RUN cd /opt && wget --no-check-certificate http://data.broadinstitute.org/igv/pr ...@@ -127,6 +127,13 @@ RUN cd /opt && wget --no-check-certificate http://data.broadinstitute.org/igv/pr
unzip IGV_2.4.14.zip && cd IGV_2.4.14 && sed -i 's/Xmx4000/Xmx8000/g' igv.sh && \ unzip IGV_2.4.14.zip && cd IGV_2.4.14 && sed -i 's/Xmx4000/Xmx8000/g' igv.sh && \
ln -s /opt/IGV_2.4.14/igv.sh /usr/local/bin/igv ln -s /opt/IGV_2.4.14/igv.sh /usr/local/bin/igv
# Subread
ARG SR_VERSION="2.0.2"
RUN cd /opt && \
wget --no-check-certificate -O subread.tgz https://sourceforge.net/projects/subread/files/subread-${SR_VERSION}/subread-${SR_VERSION}-Linux-x86_64.tar.gz/download && \
tar -xf subread.tgz && rm subread.tgz
ENV PATH /opt/subread-${SR_VERSION}-Linux-x86_64/bin:$PATH
# python modules # python modules
RUN python3 -m pip install snakemake multiqc pandas pyBigWig pysam macs2 deeptools RUN python3 -m pip install snakemake multiqc pandas pyBigWig pysam macs2 deeptools
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