missing featureCoutns

Dockerfile

@@ -127,6 +127,13 @@ RUN cd /opt && wget --no-check-certificate http://data.broadinstitute.org/igv/pr
     unzip IGV_2.4.14.zip && cd IGV_2.4.14 && sed -i 's/Xmx4000/Xmx8000/g' igv.sh && \
     ln -s /opt/IGV_2.4.14/igv.sh /usr/local/bin/igv
 
+# Subread
+ARG SR_VERSION="2.0.2"
+RUN cd /opt && \
+    wget --no-check-certificate -O subread.tgz https://sourceforge.net/projects/subread/files/subread-${SR_VERSION}/subread-${SR_VERSION}-Linux-x86_64.tar.gz/download && \
+    tar -xf subread.tgz && rm subread.tgz
+ENV PATH /opt/subread-${SR_VERSION}-Linux-x86_64/bin:$PATH
+
 # python modules
 RUN python3 -m pip install snakemake multiqc pandas pyBigWig pysam macs2 deeptools