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Aurélien Ginolhac
snakemake-chip-seq
Commits
252e1123
Verified
Commit
252e1123
authored
Jul 08, 2021
by
Aurélien Ginolhac
🚴
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missing featureCoutns
parent
81909f3f
Changes
1
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252e1123
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@@ -127,6 +127,13 @@ RUN cd /opt && wget --no-check-certificate http://data.broadinstitute.org/igv/pr
unzip IGV_2.4.14.zip
&&
cd
IGV_2.4.14
&&
sed
-i
's/Xmx4000/Xmx8000/g'
igv.sh
&&
\
ln
-s
/opt/IGV_2.4.14/igv.sh /usr/local/bin/igv
# Subread
ARG
SR_VERSION="2.0.2"
RUN
cd
/opt
&&
\
wget
--no-check-certificate
-O
subread.tgz https://sourceforge.net/projects/subread/files/subread-
${
SR_VERSION
}
/subread-
${
SR_VERSION
}
-Linux-x86_64
.tar.gz/download
&&
\
tar
-xf
subread.tgz
&&
rm
subread.tgz
ENV
PATH /opt/subread-${SR_VERSION}-Linux-x86_64/bin:$PATH
# python modules
RUN
python3
-m
pip
install
snakemake multiqc pandas pyBigWig pysam macs2 deeptools
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