plot_quality_by_cycle_picard_mm.rst 619 Bytes
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`Mean quality by cycle plot
<https://gatk.broadinstitute.org/hc/en-us/articles/360040506831-MeanQualityByCycle-Picard->`_ **(Picard)** is used as
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quality control for sequencing machine performance and collects the mean quality by cycle of the bam files after
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filtering, sorting, merging and removing orphans. Clear drops in quality within reads may indicate technical problems
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during sequencing. For more information about `collected Picard metrics
<https://gatk.broadinstitute.org/hc/en-us/articles/360037594031-CollectMultipleMetrics-Picard->`_ please
see `documentation <https://broadinstitute.github.io/picard/>`_.