qc.smk 477 Bytes
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rule fastqc:
    input:
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multiqc    
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        get_individual_fastq
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    output:
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        html="results/qc/fastqc/{sample}.{unit}.{read}.html",
        zip="results/qc/fastqc/{sample}.{unit}.{read}_fastqc.zip"
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    log:
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        "logs/fastqc/{sample}.{unit}.{read}.log"
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    wrapper:
        "0.51.2/bio/fastqc"
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rule multiqc:
    input:
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        get_multiqc_input
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    output:
         "results/qc/multiqc/multiqc.html"
    log:
        "logs/multiqc.log"
    wrapper:
        "0.51.3/bio/multiqc"