plot_deseq2_scatter.rst 506 Bytes
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**Scatter plots** uses the matrix of the
`rlog <https://bioconductor.org/packages/release/bioc/manuals/DESeq2/man/DESeq2.pdf#Rfn.rlog>`_ or
`vst <https://bioconductor.org/packages/release/bioc/manuals/DESeq2/man/DESeq2.pdf#Rfn.vst>`_ transformed counts from
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DESeq2 analysis for pairwise comparisons of samples across the groups from a particular antibody. For more information about DESeq2 please see
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`documentation <https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html>`_.