This function tests for alternative splicing.

test.multiple(Y, X, map, rho = c(0, 0.5, 1), spec = 1, steps = 20)

Arguments

Y

exon expression: matrix with \(n\) rows (samples) and \(p\) columns (exons)

X

SNP genotype: matrix with \(n\) rows (samples) and \(q\) columns (SNPs)

map

list with names "genes", "exons", and "snps" (output from map.genes, map.exons, and map.snps)

rho

correlation: numeric vector with values between \(0\) and \(1\)

spec

number of cores: positive integer

steps

number of iteration chunks: positive integer

Details

Automatic adjustment of the number of permutations such that Bonferroni-significant p-values are possible.

Examples

NA
#> [1] NA