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Commit f4df6530 authored by Armin Rauschenberger's avatar Armin Rauschenberger
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automation

parent e40f30d3
Package: joinet
Version: 0.0.1
Title: Multivariate Regression
Version: 0.0.2
Title: Multivariate Regression through Stacked Generalisation
Description: Implements high-dimensional multivariate regression by stacked generalisation (Wolpert 1992 <doi:10.1016/S0893-6080(05)80023-1>). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement.
Depends: R (>= 3.0.0)
Imports: glmnet, palasso, cornet
Suggests: knitr, testthat, MASS
Enhances: RColorBrewer, spls, SiER, MRCE
Enhances: spls, SiER, MRCE
Authors@R: person("Armin","Rauschenberger",email="a.rauschenberger@vumc.nl",role=c("aut","cre"))
VignetteBuilder: knitr
License: GPL-3
LazyData: true
Language: en-GB
RoxygenNote: 6.1.1
URL: https://github.com/rauschenberger/mixnet
BugReports: https://github.com/rauschenberger/mixnet/issues
URL: https://github.com/rauschenberger/joinet
BugReports: https://github.com/rauschenberger/joinet/issues
......@@ -80,7 +80,7 @@
#' \eqn{q} \code{\link[glmnet]{cv.glmnet}}-like objects.
#'
#' @seealso
#' Type \code{browseVignettes("joinet")} for examples.
#' \code{\link{cv.joinet}}, \code{browseVignettes("joinet")}
#'
#' @examples
#' n <- 50; p <- 100; q <- 3
......
......@@ -30,7 +30,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -77,7 +77,7 @@
<h1>Stacked Elastic Net</h1>
<small class="dont-index">Source: <a href="https://github.com/rauschenberger/mixnet/blob/master/vignettes/article.Rmd"><code>vignettes/article.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/rauschenberger/joinet/blob/master/vignettes/article.Rmd"><code>vignettes/article.Rmd</code></a></small>
<div class="hidden name"><code>article.Rmd</code></div>
</div>
......
......@@ -60,7 +60,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......
......@@ -30,7 +30,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -77,7 +77,7 @@
<h1>Multivariate Elastic Net</h1>
<small class="dont-index">Source: <a href="https://github.com/rauschenberger/mixnet/blob/master/vignettes/vignette.Rmd"><code>vignettes/vignette.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/rauschenberger/joinet/blob/master/vignettes/vignette.Rmd"><code>vignettes/vignette.Rmd</code></a></small>
<div class="hidden name"><code>vignette.Rmd</code></div>
</div>
......
......@@ -60,7 +60,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......
......@@ -5,11 +5,11 @@
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Multivariate Regression • joinet</title>
<title>Multivariate Regression through Stacked Generalisation • joinet</title>
<!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/spacelab/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css" integrity="sha256-eZrrJcwDc/3uDhsdt61sL2oOBY362qM3lon1gyExkL0=" crossorigin="anonymous">
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<script src="pkgdown.js"></script><meta property="og:title" content="Multivariate Regression">
<script src="pkgdown.js"></script><meta property="og:title" content="Multivariate Regression through Stacked Generalisation">
<meta property="og:description" content="Implements high-dimensional multivariate regression by stacked generalisation (Wolpert 1992 &lt;doi:10.1016/S0893-6080(05)80023-1&gt;). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement.">
<meta name="twitter:card" content="summary">
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
......@@ -30,7 +30,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -106,9 +106,9 @@
<ul class="list-unstyled">
<li>Download from CRAN at <br><a href="https://cloud.r-project.org/package=joinet">https://​cloud.r-project.org/​package=joinet</a>
</li>
<li>Browse source code at <br><a href="https://github.com/rauschenberger/mixnet">https://​github.com/​rauschenberger/​mixnet</a>
<li>Browse source code at <br><a href="https://github.com/rauschenberger/joinet">https://​github.com/​rauschenberger/​joinet</a>
</li>
<li>Report a bug at <br><a href="https://github.com/rauschenberger/mixnet/issues">https://​github.com/​rauschenberger/​mixnet/​issues</a>
<li>Report a bug at <br><a href="https://github.com/rauschenberger/joinet/issues">https://​github.com/​rauschenberger/​joinet/​issues</a>
</li>
<li>Download package at <br><a href="https://github.com/rauschenberger/joinet">https://​github.com/​rauschenberger/​joinet</a>
</li>
......
......@@ -60,7 +60,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -106,7 +106,7 @@
<div class="col-md-9 contents">
<div class="page-header">
<h1>Changelog <small></small></h1>
<small>Source: <a href='https://github.com/rauschenberger/mixnet/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
<small>Source: <a href='https://github.com/rauschenberger/joinet/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="joinet-001-2019-07-31" class="section level2">
......
......@@ -65,7 +65,7 @@ the coefficients from the base learners.)" />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -111,7 +111,7 @@ the coefficients from the base learners.)" />
<div class="col-md-9 contents">
<div class="page-header">
<h1>Extract Coefficients</h1>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/mixnet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/joinet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<div class="hidden name"><code>coef.joinet.Rd</code></div>
</div>
......
......@@ -63,7 +63,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -109,7 +109,7 @@
<div class="col-md-9 contents">
<div class="page-header">
<h1>Model comparison</h1>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/mixnet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/joinet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<div class="hidden name"><code>cv.joinet.Rd</code></div>
</div>
......
......@@ -60,7 +60,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......
......@@ -63,7 +63,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -109,7 +109,7 @@
<div class="col-md-9 contents">
<div class="page-header">
<h1>Multivariate Elastic Net Regression</h1>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/mixnet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/joinet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<div class="hidden name"><code>joinet.Rd</code></div>
</div>
......@@ -206,7 +206,7 @@ ridge renders dense models (<code>alpha</code>\(=0\))</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p>Type <code><a href='https://www.rdocumentation.org/packages/utils/topics/browseVignettes'>browseVignettes("joinet")</a></code> for examples.</p></div>
<div class='dont-index'><p><code><a href='cv.joinet.html'>cv.joinet</a></code>, <code><a href='https://www.rdocumentation.org/packages/utils/topics/browseVignettes'>browseVignettes("joinet")</a></code></p></div>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
......
......@@ -63,7 +63,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -109,7 +109,7 @@
<div class="col-md-9 contents">
<div class="page-header">
<h1>Make Predictions</h1>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/mixnet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/joinet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<div class="hidden name"><code>predict.joinet.Rd</code></div>
</div>
......
......@@ -64,7 +64,7 @@ i.e. the weights for the base learners." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.1</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.2</span>
</span>
</div>
......@@ -110,7 +110,7 @@ i.e. the weights for the base learners." />
<div class="col-md-9 contents">
<div class="page-header">
<h1>Extract Weights</h1>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/mixnet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/joinet/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
<div class="hidden name"><code>weights.joinet.Rd</code></div>
</div>
......
......@@ -77,5 +77,5 @@ Armin Rauschenberger, Enrico Glaab (2019)
\emph{Manuscript in preparation}.
}
\seealso{
Type \code{browseVignettes("joinet")} for examples.
\code{\link{cv.joinet}}, \code{browseVignettes("joinet")}
}
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