Commit c9b0ed92 authored by Rauschenberger's avatar Rauschenberger

initialise

parents
^Readme\.Rmd$
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^_pkgdown\.yml$
^docs$
^cran-comments\.md$
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# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r
language: R
os:
- linux
sudo: false
cache: packages
use_bioc: true
bioc_required: true
r:
- devel
r_packages:
- covr
after_success:
- Rscript -e 'library(covr); codecov()'
Package: spliceQTL
Version: 0.0.0
Title: Alternative Splicing
Description: Implements test for alternative splicing.
Depends: R (>= 3.0.0)
Imports: lme4, globaltest, edgeR, snpStats, refGenome, R.utils, methods
Suggests: knitr, testthat
Authors@R: c(person("Armin","Rauschenberger",email="a.rauschenberger@vumc.nl",role=c("aut","cre")),
person("Renee","Menezes",role=c("aut")))
VignetteBuilder: knitr
License: GPL-3
LazyData: true
RoxygenNote: 6.0.1
URL: https://github.com/rauschenberger/spliceQTL
BugReports: https://github.com/rauschenberger/spliceQTL/issues
# Generated by roxygen2: do not edit by hand
export(adjust.exon.length)
export(adjust.library.sizes)
export(drop.trivial.genes)
export(map.exons)
export(map.genes)
export(map.snps)
export(prepare.data.matrices)
export(spliceQTL)
## spliceQTL 0.0.0 (2018-06-12)
* Added functions
\ No newline at end of file
This diff is collapsed.
---
output: github_document
---
<!-- Modify xxx.Rmd, not xxx.md! -->
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "README-"
)
```
## Scope
spliceQTL
## Installation
```{r,eval=FALSE}
#install.packages("devtools")
devtools::install_github("rauschenberger/spliceQTL")
```
## Reference
<!-- Modify xxx.Rmd, not xxx.md! -->
## Scope
spliceQTL
## Installation
``` r
#install.packages("devtools")
devtools::install_github("rauschenberger/spliceQTL")
```
## Reference
# DO NOT CHANGE the "init" and "install" sections below
# Download script file from GitHub
init:
ps: |
$ErrorActionPreference = "Stop"
Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
Import-Module '..\appveyor-tool.ps1'
install:
ps: Bootstrap
cache:
- C:\RLibrary
# Adapt as necessary starting from here
build_script:
- travis-tool.sh install_bioc_deps
- travis-tool.sh install_deps
test_script:
- travis-tool.sh run_tests
on_failure:
- 7z a failure.zip *.Rcheck\*
- appveyor PushArtifact failure.zip
artifacts:
- path: '*.Rcheck\**\*.log'
name: Logs
- path: '*.Rcheck\**\*.out'
name: Logs
- path: '*.Rcheck\**\*.fail'
name: Logs
- path: '*.Rcheck\**\*.Rout'
name: Logs
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name: Bits
- path: '\*_*.zip'
name: Bits
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